Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03009 ATGTCTAACGAAGGAGGAGAAAAAAGCATCATGCTTTTTGGCGTTCGAATCACCCAAGGAACCAACAACACCAACACCAGCAACAACTACCTCTCACAAGTTTCCACCTCCAGTAATGTCTTTGACATTAATGCATCGGGATCCCGCGAATGCAAACGAGttaacGAAGGTAATTGGACCAAGGAAGAACACATGAGGTTTTTGGAAGGATTGAAACATACTCGTAAAGGTAAGTGGAAAGAAATTTCTACAGATTTTGTAAAAACTCGCACACCAACTCAAGTTGCAAGTCATGCGCAAAAGCATTTTCTCCTCCATCTCAACCAGAACCGCCGCCGTAACGGAAAACCTAGTGTCTTTGATCTTACCATTGAtacggaGGTAGAATCTTCAACTATTATGAAAGATGAGCAAATTCAGCAAGAAACTTTGGTGCCCCTACCTCCACCAACCCCCACTGCATATCCATCCACACACAATGGCGGCAGCCCCACCAACAGCCCTTTACCGATCAGTCTTGATCCAATGGCATTGCCAGTGTGGCCTCTttcttatgttgacttgaatGACAATGGATCTTCTTCCGCTGAGCCTTTTCCATTGTTATTGAAGCTGCAATCTTTGCCTCCATTGGACGATCATTCACCGAAAACTAGTGGTCATTCGTCACCATTGGCTTCATTGTCGGCTTTTAATTATAGTggtgggagtggggataatataatataa 729 0.4115 MSNEGGEKSIMLFGVRITQGTNNTNTSNNYLSQVSTSSNVFDINASGSRECKRVNEGNWTKEEHMRFLEGLKHTRKGKWKEISTDFVKTRTPTQVASHAQKHFLLHLNQNRRRNGKPSVFDLTIDTEVESSTIMKDEQIQQETLVPLPPPTPTAYPSTHNGGSPTNSPLPISLDPMALPVWPLSYVDLNDNGSSSAEPFPLLLKLQSLPPLDDHSPKTSGHSSPLASLSAFNYSGGSGDNII 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03009 242 CDD SANT 58 103 IPR001005 -
Tsu03g03009 242 ProSiteProfiles Myb-like domain profile. 51 103 IPR001005 -
Tsu03g03009 242 MobiDBLite consensus disorder prediction 144 166 - -
Tsu03g03009 242 Gene3D - 57 106 - -
Tsu03g03009 242 Pfam Myb-like DNA-binding domain 57 102 IPR001005 -
Tsu03g03009 242 PANTHER TRANSCRIPTION FACTOR KUA1 8 226 - -
Tsu03g03009 242 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 104 IPR006447 GO:0003677
Tsu03g03009 242 SUPERFAMILY Homeodomain-like 55 105 IPR009057 -
Tsu03g03009 242 SMART sant 55 105 IPR001005 -
Tsu03g03009 242 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 8 226 - -
Tsu03g03009 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 107 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03009 Tsu-Chr3 41192019 41194050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g03009 Myb_DNA-binding 4.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03009 - - mtr:MTR_5g037080 202.601