Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03003 ATGGTATTGGCCATTGTTTTCACTTCCGCTGCTACGGATAGTTACATTTACTCTTCTCCGCCACCTTACCAATACAAATCACCACCTCCATCTCCATATGTGTACAAGTCACCACCTTCAATAGCTGAAAGTGCTTCAAAAACTGTtgagCAAAACGAAAAATCCAACAATGATATACTTCATAAACTGGCTACCTCAAGTATTGGTCAAAAGgaaaatgtaaaaaaatggACTAAGATTGGTGTCATCGGACAAAGTCTTGATTTGAAGCTGAGGCAAGCGGAGAGTAACAAAGTGAATATTAGTGTTAACCCAAATGGTAGTGGTGATTTCAAGACCATTACTGAAGCTATCAACAACATTTCAGCACCCAACAATAGAagagtttttgttttcattGCGCCCGGTCTTTACAGGGAGAAAATAGTGATCTCTCAAGATTtgcatttcataacattcttaGGGGATGCAACGAACAAACCAATTATTACCGGAAATGATAAAGCATCTACCATTGGAAGTGATGGGAAACCATTAATGACGCTCAAGAGTGCAACAGTTGCAGTGGATGCGGATTATTTCATAGCTATCAACATTGTATTCGAGAACACTGCATCACCTCGTATTGGATCGAATAATGATCAAGCTGTTGCTCTTCGCATCTCTGGAAACAAATGTGCTTTTTACAATAGCGACTTCTATGGATTTCAAGACACGTTGTATGATCATAAAGGCCTCCACTACTTCAATGGTTGCACAATTCAAGGCACTACTGATTTTATCTTTGGGAATGGGAGGTCCCTTTATGAGGTAGTATTTCAAGATTATTTGTTGCTTAATCATGTTTACTTGTTGCTTAGTCATGTTTTCTTGATGCAGGGCTGCACTCTAAATTCCATAGCCCAAAATTCAGGCTTTATCACAGCTCAAAAACGCTCAAGTTTGACAATTGATAGTGGGTTTTCAATATTAAAGAGCAAAGTAATAGGGAGCGGTCAAGTTTATTTGGGAAGACCATGGGGAGATTACTCGAGAGTAATTTTCTCTTATACCTACATGGACAATCTTGTTCTCCCTCAAGGATGGGTTGACACTATGGACGATGGGCACCACCACAACTTGTTAGTACGAATTTTACCTTGTCGTTATATAAATTATACAAATGCACTAAAAGACTTATTGTATGTATTTCTTTGTGAAGGACCGTATTATATGCAGAATACAAGTGTAGTGGACCTGGATCCAATTTTGCTGGAAGACCTCCATGGATACGAAGATTGTCGGACAAAGATGCTAAAGAATTTATCGGACTCCATTTCATTTATGGTGAGACTTGGCTCATTAGCAGTGGCGGTGCTCGGACCGTGGCCCAGTGGTGcaaatttttaa 1389 0.3816 MVLAIVFTSAATDSYIYSSPPPYQYKSPPPSPYVYKSPPSIAESASKTVEQNEKSNNDILHKLATSSIGQKENVKKWTKIGVIGQSLDLKLRQAESNKVNISVNPNGSGDFKTITEAINNISAPNNRRVFVFIAPGLYREKIVISQDLHFITFLGDATNKPIITGNDKASTIGSDGKPLMTLKSATVAVDADYFIAINIVFENTASPRIGSNNDQAVALRISGNKCAFYNSDFYGFQDTLYDHKGLHYFNGCTIQGTTDFIFGNGRSLYEVVFQDYLLLNHVYLLLSHVFLMQGCTLNSIAQNSGFITAQKRSSLTIDSGFSILKSKVIGSGQVYLGRPWGDYSRVIFSYTYMDNLVLPQGWVDTMDDGHHHNLLVRILPCRYINYTNALKDLLYVFLCEGPYYMQNTSVVDLDPILLEDLHGYEDCRTKMLKNLSDSISFMVRLGSLAVAVLGPWPSGANF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03003 462 Pfam Pectinesterase 100 368 IPR000070 GO:0030599|GO:0042545
Tsu03g03003 462 Gene3D - 95 390 IPR012334 -
Tsu03g03003 462 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 45 368 - -
Tsu03g03003 462 PANTHER PECTINESTERASE 45 368 - -
Tsu03g03003 462 SUPERFAMILY Pectin lyase-like 99 375 IPR011050 -
Tsu03g03003 462 ProSitePatterns Pectinesterase signature 2. 254 263 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03003 Tsu-Chr3 41145850 41148614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03003 101 364 Carbohydrate Esterase AT5G55590 40.977 3.09e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03003 K01051 - pvy:116132618 335.495