Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03000 ATGGAAGAGGAATCTGTGAAAAAGTGTTGGAGAAAAGAAGTAGATGAAAATCTTCAAAGATTACACTCTCTCTTGTTCGGTGTTGAACGTGCCCTAGATGAACAAAATCGCGATTTCTCTTCCGCTTATATTCTCTCTCTTCGTCTCATCGGTTTCATTGATTCTCGTTCTCAATCAGAAATCGATCAAGCTTTTCTTCAACAGACTCGTCGTCAAGCTTTAACCTATCTTCATACAGCTAAACAATCTCTCACTCCTCTCATTGATCGCCAAGCTTTTGAGAAAGCAAAGAGGTCTCCAGGACCGATTTTCAACTCAACAGGAGATATTGACATTGACAAGATACGGAATTCTAAATACTTTCAAGCTCTTCTTAAGCCATCTAAAGAAAAAGATTGCAATCAATTGGTTGATCAACTGGGGAAGCAAAACAAGACAGGCAGAGAAGCATCAAAGGGAGTGGTGCAAGCAAAGTTAACATCCATATATGGGAAAAGCAGCTTGAGGACTAGTAATGGTTCCAAAAGTTTTTTCAACTTGAAAAATAACAACCCTGAGGACTGCATAGTTATTGGAAGGCCTCAATCACATGGCATCCATACAAAGGGTCCTGGTGTCTCTTCCATTTTTGAAGTTGAAGGAGAAGGAAGAGCTTCTGGTGGAAACACTTTTCCGACAAGACGTGCACACGTGGAAAATACTAGCCCCAGAGTTGGTTATGTCAAGTCACCTTCAATCAAGGAGGAAGTTAATCCCGATGTCGCTGGCAATGGGTTTGTTACTGCCAAAGCAAAGTTGTTAATGGATGTAAAGCAAAAGTGGGGTGCAATTGGTTCACCGAGTGCACCTGTCTCACCAGAATGCGACAACAGTCCTGCCAACAGGCAATATGGTGGGAGATCATATGGTGTTTCACGACGTGGCATCCGCAGTAATTTTGTCCCCCCTATTAAATCCAATGGGAGCAATACTGGAAATATAACTTCCCGAATTGCTGGCAACAAGTGTGGTGATTCTTTAGATGAGTCTACAAAGAAATGTTTGGAAATGCTGTATGGTCCTGATGGTGAACTTCCTGAGAAGTTAAGGAATTTAGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAAAGATCCCAATGTCCTCTGGGATGACATTGCTGGATTGGCCCATGCCAAAAATTGTGTCCATGAGATGGTCATATTACCTCTGCAACGTCCTGACTTATTTATGGGCTGCCGTTCTCCTGGGAGAGGTCTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCTGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTCTTTGGAGTAGCCAGTTGTCGTCAGCCAGCAgtaatttttgttgatgaaatAGATTCTCTCTTGTCTCAGCGTAAGTCAGAGGGTGAGCATGAAGCAAGCAGAAGGCTAAAGACACAGTTTCTTATTGAAATGGAAGGTTTTGACGGTGGCAACGACCAAATTCTGCTTATAGGGGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCACGGAGGAGACTTACGAAAAGACTTTATATCCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTGCGCGTAGCCTTTTAGAGAAGGATGGATTATTCAATCTATCAAATGAGGAAATGGAAGTTATATGCAATTTAACAGATGGTTATTCAGGATCAGACATGAAAAATTTAGTGAAGGATGCTTCTATGGGTCCCctgagagagaaaataagacAAGGTGTAAAAATTTTAGATTTGAAAAAGGAGGATATTAGGCCAGTAACTCTTCAGGACTTCAAAGATTCCCTGAATGAGGTGAGACCTTCTGTTTCACCTGATGAACTCGGCACTTATGAGCAATGGAACAAGAAATTTGGAAGCTTGGCAGTTTAG 1995 0.417 MEEESVKKCWRKEVDENLQRLHSLLFGVERALDEQNRDFSSAYILSLRLIGFIDSRSQSEIDQAFLQQTRRQALTYLHTAKQSLTPLIDRQAFEKAKRSPGPIFNSTGDIDIDKIRNSKYFQALLKPSKEKDCNQLVDQLGKQNKTGREASKGVVQAKLTSIYGKSSLRTSNGSKSFFNLKNNNPEDCIVIGRPQSHGIHTKGPGVSSIFEVEGEGRASGGNTFPTRRAHVENTSPRVGYVKSPSIKEEVNPDVAGNGFVTAKAKLLMDVKQKWGAIGSPSAPVSPECDNSPANRQYGGRSYGVSRRGIRSNFVPPIKSNGSNTGNITSRIAGNKCGDSLDESTKKCLEMLYGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVLWDDIAGLAHAKNCVHEMVILPLQRPDLFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHEASRRLKTQFLIEMEGFDGGNDQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIARSLLEKDGLFNLSNEEMEVICNLTDGYSGSDMKNLVKDASMGPLREKIRQGVKILDLKKEDIRPVTLQDFKDSLNEVRPSVSPDELGTYEQWNKKFGSLAV 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03000 664 PANTHER FIDGETIN-LIKE PROTEIN 1 94 661 - -
Tsu03g03000 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 659 IPR027417 -
Tsu03g03000 664 Gene3D - 554 640 - -
Tsu03g03000 664 CDD AAA 416 553 - -
Tsu03g03000 664 Gene3D - 382 656 IPR027417 -
Tsu03g03000 664 ProSitePatterns AAA-protein family signature. 525 544 IPR003960 GO:0005524|GO:0016887
Tsu03g03000 664 MobiDBLite consensus disorder prediction 284 298 - -
Tsu03g03000 664 Pfam ATPase family associated with various cellular activities (AAA) 423 553 IPR003959 GO:0005524|GO:0016887
Tsu03g03000 664 PANTHER AAA DOMAIN-CONTAINING 94 661 - -
Tsu03g03000 664 MobiDBLite consensus disorder prediction 279 302 - -
Tsu03g03000 664 Pfam AAA+ lid domain 585 616 IPR041569 -
Tsu03g03000 664 SMART AAA_5 419 555 IPR003593 -
Tsu03g03000 664 Pfam Vps4 C terminal oligomerisation domain 626 660 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03000 Tsu-Chr3 41113289 41119449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03000 337 663 Calmodulin-binding Proteins AT3G56690 30.267 2.06e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03000 K22766 - gmx:100776024 1019.22