Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02992 ATGCAGAGGGAAAGTCTTGATTTGAAGTTGACACAAGCTGAAAGTAACAAGTTGAATATTAGCGTTAATCCAAATGGTAGTGGTGATTTCAAGACCATCACTGAAGCTATCAACAGCATTCCAGCACCCAACAGCAGAAGAGTTGTTATCTTCATTGTGCCCGGTCTTTATAgGAACTTGTTTCTTGCTAAGGAGTGGATTCTTGATAAACTTGCCAATAACACGGCATCACCTCGTCCTGGATCAAAAAATGATCAAGCTGTTGCTCTGCGCATCTCCGGAACCAAGGGTGCTTTTTACAATAGCGAGTTCAAGGGATTTCAAGACACACTTTATGATGACAAAGGACTCCATTACTTCAAAGATTGCATGATTCAAGGCAGTGTTGATTTCATCTTTGGAGACGGGAGGTCCCTTTATGAGGGCTGCACTATAAAATCCATAGCCCAAAAATCGGGTTTTATCACAGCTCAAAAGCGCTCAAGTTTGACAACTGATCATAGTGGGTTTTCAATATTAAACAGCAAAGTAATTGGAACCGGTCAAGTTTATTTGGGAAGGCCGTGGGCAGATTACTCGAGAGTAATTTTCTCTTTTACTTACATGGACACTCTAGTTCTCCCACAAGGATGGATTGACACCATGGACGGAAACCACCATAATTTGACCGTATTCTATGCAGAATATAAGTGTAGTGGACCAGGATCAAATCTTGCTGGAAGACCTGCATGGATACGGAGATTATCAGACAAAGATGCCAAGGAATTTACCGGAGTCCATTTCATATATGGAGAGACTTGGCTCCAAGGACCGAGCTATATATAG 825 0.417 MQRESLDLKLTQAESNKLNISVNPNGSGDFKTITEAINSIPAPNSRRVVIFIVPGLYRNLFLAKEWILDKLANNTASPRPGSKNDQAVALRISGTKGAFYNSEFKGFQDTLYDDKGLHYFKDCMIQGSVDFIFGDGRSLYEGCTIKSIAQKSGFITAQKRSSLTTDHSGFSILNSKVIGTGQVYLGRPWADYSRVIFSFTYMDTLVLPQGWIDTMDGNHHNLTVFYAEYKCSGPGSNLAGRPAWIRRLSDKDAKEFTGVHFIYGETWLQGPSYI 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02992 274 Gene3D - 2 62 IPR012334 -
Tsu03g02992 274 Pfam Pectinesterase 80 264 IPR000070 GO:0030599|GO:0042545
Tsu03g02992 274 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 60 - -
Tsu03g02992 274 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 268 - -
Tsu03g02992 274 PANTHER PECTINESTERASE 4 60 - -
Tsu03g02992 274 PANTHER PECTINESTERASE 73 268 - -
Tsu03g02992 274 Gene3D - 63 272 IPR012334 -
Tsu03g02992 274 SUPERFAMILY Pectin lyase-like 18 269 IPR011050 -
Tsu03g02992 274 ProSitePatterns Pectinesterase signature 2. 125 134 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02992 Tsu-Chr3 41014444 41020524 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02992 2 271 Carbohydrate Esterase AT5G07420 39.297 3.48e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02992 K01051 - cit:102614801 286.574