Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02985 ATGCTTTTCCGTTTCACTTCTCCTATAATCACAAAGAAAGCCACAGCTCAAAATCATAATCTTATGGCTTCAAACTATGCATTAACGTTGCTTCTCATCACAATTTTCTTCTACACAATTGAGGCTCAAGCTCAACAATTGCATGAAAGTCTTGATTTGAAGTTGACACAAGCTGAAAGTAACAAGTTGAATATTAGCGTTAATCCAAATGGTAGTGGTGATTTCAAGACCATCACTGAAGCTATCAACAGCATTCCAGCACCCAACAACAGAAGAGTTATTGTTTTCATTGCAACCAATGTTTATAGGGAGAAAATCGTGATCCCCCAATCGTTGCCTTTCGTAACATTCTTAGGGGATGCAACGAAGATGCCAACTATTACTGGAAACAATAAAGCATCTACCATTGGAAGTGATGGGAAAAAATTGGGGACACTCAATAGTGCGACTGTCGCTGTGAATGCTGACTACTTTATGGCCATCAACGTTATATTTCAGAACACTGCATCACCTCGCATTGGATCAAATGAAGATCAAGCGGTTGCTCTTCGCACCTCTGGAAATAAAAGCGCTTTTTACAATTGCCGCTTCCATGGATTCCAAGATACGTTGTACGATCATAATGGCCTTCACTACTTCAAAGGTTGTTATATTCAAGGCACAGTTGATTTCATCTTTGGCCATGGGAGGTCCCTTTATGAGGGCTGTACTATAGAGTCCATAGCCCAAAATTTGGGATTTATCACAGCTCAAGAGCGCTCAAGTGTGTCAATGGAGAGCGGATTTTCAATAACAAATAGCAAAGTATTAGGAAGTGGTCAGGTCTATCTCGGAAGACCGTGGGGACCATACTCACGGGTCATTTACTCTTATACCAACATGAACAATATTATTCTCCCCCAAGGATGGGATGATACTATGAACGCACAAAACAGCAGCTTGACCGCGTATTATGGAGAGTATAAGTGTAGCGGACCTGGTTCCAACTTAGCTAGACGACCTCCATGGGTACACAGATTGACTGATCAAGAAGCCAAGGAATTTATAGGCATCCATTTCATTTATGGGGAAACTTGGCTAATTCACCCTTCATTGTGA 1098 0.4126 MLFRFTSPIITKKATAQNHNLMASNYALTLLLITIFFYTIEAQAQQLHESLDLKLTQAESNKLNISVNPNGSGDFKTITEAINSIPAPNNRRVIVFIATNVYREKIVIPQSLPFVTFLGDATKMPTITGNNKASTIGSDGKKLGTLNSATVAVNADYFMAINVIFQNTASPRIGSNEDQAVALRTSGNKSAFYNCRFHGFQDTLYDHNGLHYFKGCYIQGTVDFIFGHGRSLYEGCTIESIAQNLGFITAQERSSVSMESGFSITNSKVLGSGQVYLGRPWGPYSRVIYSYTNMNNIILPQGWDDTMNAQNSSLTAYYGEYKCSGPGSNLARRPPWVHRLTDQEAKEFIGIHFIYGETWLIHPSL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02985 365 Pfam Pectinesterase 64 356 IPR000070 GO:0030599|GO:0042545
Tsu03g02985 365 Gene3D - 59 364 IPR012334 -
Tsu03g02985 365 PANTHER PECTINESTERASE 44 361 - -
Tsu03g02985 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 44 361 - -
Tsu03g02985 365 SUPERFAMILY Pectin lyase-like 63 360 IPR011050 -
Tsu03g02985 365 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02985 Tsu-Chr3 40964983 40972742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02985 48 363 Carbohydrate Esterase AT1G69940 42.453 2.50e-92 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02985 K01051 - qsu:112011696 404.831