Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02960 ATGCTTTTTGGCGTTCGAATCACCAAAGGAACTAACAATAGCACCAATAACAACAACCACTCTCAACAACTTCCTCCTCAAGTTTCCACATCCATTGATGCcactaatgtctatgacaatgTCGTTCATGCCTCTGCTGGATCTCGTGAATGCAAACGATttagCGAAGGTAGTTGGACAGAGGAAGAACACAAGAAGTTTTTGATAGGGTTGAGGGATAAAGGTAAAGGTCACTGGAAAGCAATTTCTGAAGATTTTGTCAAAACTCGGACCCCGACTCAAGTTGCCACTCATGCTCAGAAGTATTATCTGTTTTGTCAGAACCAGAATCGCCGCCACGGTGGGAAACCTAGTATATTTGAACTTACCATTGATCCGgacGTAGAATCTTCAACTATTGTGGAAGATGAGCAAATTCAGCAAGAAATTGTGGTGCCcctaccaccaccaccaacccTCACTGCATATCAATCCACACAAAATGGCGGCAGCCCTTTATCGTTATGTCTTGGTCCAATACCATTGGCGGTGTGGCCTCTTTCTTCAATCGACTTGAATGACAACGGAGCTTCTTCTTCCACTGAGATTTTTCCATTATCATTAAAGCTGCAATCATCGCCTCCATCGGACGATTATTCACCAAAAACTAGCCGTCATTTGTCACCATCAACTTCATCGCTGGCTTTTAATTCTATGTCTGCTGGGAAGTCTAGCGGTGGAAGTGGGGATAATATTAACCGTGTTGCCTGA 750 0.408 MLFGVRITKGTNNSTNNNNHSQQLPPQVSTSIDATNVYDNVVHASAGSRECKRFSEGSWTEEEHKKFLIGLRDKGKGHWKAISEDFVKTRTPTQVATHAQKYYLFCQNQNRRHGGKPSIFELTIDPDVESSTIVEDEQIQQEIVVPLPPPPTLTAYQSTQNGGSPLSLCLGPIPLAVWPLSSIDLNDNGASSSTEIFPLSLKLQSSPPSDDYSPKTSRHLSPSTSSLAFNSMSAGKSSGGSGDNINRVA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02960 249 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 17 238 - -
Tsu03g02960 249 CDD SANT 58 102 IPR001005 -
Tsu03g02960 249 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 104 IPR006447 GO:0003677
Tsu03g02960 249 SMART sant 55 105 IPR001005 -
Tsu03g02960 249 SUPERFAMILY Homeodomain-like 57 107 IPR009057 -
Tsu03g02960 249 Gene3D - 57 108 - -
Tsu03g02960 249 ProSiteProfiles Myb-like domain profile. 51 103 IPR001005 -
Tsu03g02960 249 PANTHER TRANSCRIPTION FACTOR KUA1 17 238 - -
Tsu03g02960 249 MobiDBLite consensus disorder prediction 7 26 - -
Tsu03g02960 249 MobiDBLite consensus disorder prediction 1 26 - -
Tsu03g02960 249 MobiDBLite consensus disorder prediction 202 249 - -
Tsu03g02960 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 107 IPR017930 -
Tsu03g02960 249 Pfam Myb-like DNA-binding domain 57 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02960 Tsu-Chr3 40488527 40490209 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g02960 Myb_DNA-binding 3.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02960 - - mtr:MTR_5g037080 204.912