Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02955 ATGTCTCAATCTCGAACATGCTCACAGTGCAACCACATCTCTCAAACATGCTCAAATTGCGGCCACATGTCTCAAACATGCTCAAACTGCGGCCACAACTCGCCAACATGCAATGACCGAGGAGAAAACAACATCATGTTTTTTGGCGTTCAACTCACTAGAGGaaccaataacaacaacaacaactctcAATACCAACAACCTTCCCCTCAAATTTCCACCTCCACAGATGCCAATAATGTCTTTGGCAATGTCATTCACCCCTCTGCGGGATCTCGTGAATGCAAACAAGttaatGAAGGTAGTTGGACGAAGGAAGAATACATGAGATTTTTGATAGGGTTGAGAGATAAAGGCAAAGGTAAGTGGAAAATAATTTCTAAAGAATTTGTCAAAACTCGAACACCAACTCAAGTTGTCAGTCATGCTCAGAAGCATTATCTGCTTCTCTCTCCAAACCAAAATCGCCGCCGCAGTGGAAAATTTAGTGTATTTGATCTTACCATTGGTCCGGTAATTCTTTCCTTGTTCTAA 534 0.4007 MSQSRTCSQCNHISQTCSNCGHMSQTCSNCGHNSPTCNDRGENNIMFFGVQLTRGTNNNNNNSQYQQPSPQISTSTDANNVFGNVIHPSAGSRECKQVNEGSWTKEEYMRFLIGLRDKGKGKWKIISKEFVKTRTPTQVVSHAQKHYLLLSPNQNRRRSGKFSVFDLTIGPVILSLF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02955 177 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Tsu03g02955 177 PANTHER TRANSCRIPTION FACTOR KUA1 19 168 - -
Tsu03g02955 177 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Tsu03g02955 177 PANTHER TRANSCRIPTION FACTOR KUA1 19 168 - -
Tsu03g02955 177 CDD SANT 102 146 IPR001005 -
Tsu03g02955 177 Gene3D - 101 150 - -
Tsu03g02955 177 SMART sant 99 149 IPR001005 -
Tsu03g02955 177 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 147 IPR006447 GO:0003677
Tsu03g02955 177 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 151 IPR017930 -
Tsu03g02955 177 SUPERFAMILY Homeodomain-like 99 150 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02955 Tsu-Chr3 40416256 40417001 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g02955 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02955 - - mtr:MTR_5g037080 135.576