Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02948 ATGGATGAATTAATTAGACTTGTGCGGTACAGAGAACCATTATGGATAAAATCTTCTAgtgttgatgaagatgaagatgagaAATTTACCCTTTCTCATGAAAGATATAACCAACTTTTCTCCAAGAAAAATCACTTCAATGGTGCCAATGTGATCAAAGAATCTTCAAAATATTCTGCCACAGTGAACATTAGTTGCTCTACATTGATTAACATGTTTTTGGACTCTGTCGAGTGGACAAAAGTGTTCCCAACAATTGTATCAAAATCTGAAATAACCAAAGTGCTTGAACATGGGTCATTGGAAAATCGAAATGGAGCAATGCAGTTGATGTATGAACAAATGCACATTTTATCACCTCTAGTGCGACCTCGGGAATTTAACATCATTCGTTATTGCAAAGAAGTTAATGTTGGGGTTTGGGTAATAACAGATGTATCATATGATACCTCTCGAGCACTAAATACCCCTCTTGCTCGTTCTTGGAAACATCCCTCTGGATGCTTGATTCGTGTAATAAAGAATACAAATTCTTGCAAGgtTACTTGGGTTGAACATGTGGAAGTGGATGATATGATGCAAACACACTACATATATAGATATCTTATTGGTGCCTATAATTTATATGGAGCAGAAAGTTGGATTAGGGAGCTTAAGAGAATGTGTGAGAGAGCAGTTAGTTGCTATGTTAAAAGCATAGTTTGTCATGAATTTAGAGGAGTTATCCAAACACTTGAAGGGAGGAAGAGTGTGATGGAACTTGCTCATCGAATGGTTAAGTTATTTTGTAAAAGCTTGGTCATATCAAATAACATTGAATTTccaaatttaattgaaaatagcATTGGAGGCATTAGGGTCTCTTTTGAGAAAACCAATAGTGAGGTCAAGCCAAATGGCATGGTTGTTGCTGCCGCTGCCACCCTTTGGATTCCTCAATCAGCTGACAAAGTTTTTAAGTTCCTCGCAGATCCTACAAAACGATTTAAGtGGGATATCCTTTGTTACCAAAGTCCGGTGAATGAGGTTGGACGCATTTCAAACGGACGTCATCCTGGAAACATCACTTCCATTATCAAGGTGGATCAACCATTCATCCCCAATAGTGAGAACAATGTTATGATTCTTCAAGAAAGCTTTACATCACCTGTGGgatcatatattatatttgctCCAAGTAATTCAGAATCTATGAATGTGGCCATAAGGGGTGGAGACTCTACAAGAATGCATATTCTACCATCAGGTTTTGTTGTATGTTCAAATGAAAAACTTTATGGAAATTCAAAAGTTGGTTCTTTGTTGACTATAGCTTACCAAACTTTGGCTTCTAGTCAAGATGGAACTATGATGTCAACAATGGAAGCTGTGGCTAATGCTAACACACTTGTGACCAATACTCTTGTGAAAGTAAAGGAAGCACTCAAGAGTTGCCCATGGATATAG 1446 0.361 MDELIRLVRYREPLWIKSSSVDEDEDEKFTLSHERYNQLFSKKNHFNGANVIKESSKYSATVNISCSTLINMFLDSVEWTKVFPTIVSKSEITKVLEHGSLENRNGAMQLMYEQMHILSPLVRPREFNIIRYCKEVNVGVWVITDVSYDTSRALNTPLARSWKHPSGCLIRVIKNTNSCKVTWVEHVEVDDMMQTHYIYRYLIGAYNLYGAESWIRELKRMCERAVSCYVKSIVCHEFRGVIQTLEGRKSVMELAHRMVKLFCKSLVISNNIEFPNLIENSIGGIRVSFEKTNSEVKPNGMVVAAAATLWIPQSADKVFKFLADPTKRFKWDILCYQSPVNEVGRISNGRHPGNITSIIKVDQPFIPNSENNVMILQESFTSPVGSYIIFAPSNSESMNVAIRGGDSTRMHILPSGFVVCSNEKLYGNSKVGSLLTIAYQTLASSQDGTMMSTMEAVANANTLVTNTLVKVKEALKSCPWI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02948 481 SMART START_1 9 224 IPR002913 GO:0008289
Tsu03g02948 481 SUPERFAMILY Bet v1-like 1 224 - -
Tsu03g02948 481 ProSiteProfiles START domain profile. 1 227 IPR002913 GO:0008289
Tsu03g02948 481 CDD START_ArGLABRA2_like 1 223 - -
Tsu03g02948 481 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 1 477 - -
Tsu03g02948 481 Pfam START domain 1 224 IPR002913 GO:0008289
Tsu03g02948 481 Gene3D - 19 224 IPR023393 -
Tsu03g02948 481 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 477 IPR042160 -
Tsu03g02948 481 SUPERFAMILY Bet v1-like 247 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02948 Tsu-Chr3 40226505 40229595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02948 1 479 Homeobox Transcription Factor Family AT1G17920 36.722 7.57e-100 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02948 K09338 - gmx:100795075 473.011