Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02944 ATGGCTTCATGGTACGTGATTCTTCTTCTCATCACTGTTCTTTGTTTCCATGCAAAAGCTCAACCATTGCAAACATCAATAGATGGAAATGCTTCTAATACTCTTGAGGTTAAGAGACATGAGGGACCAGGAGTGCCTTTAAAGCGAGATGAAGCAATAACTGCTGATGCTGCTATAACTGATCAGGTGTTGAACAGTAGCTTGGAGAATGTATCTCAGTCATTGGTATCCAAAGAAGAAATGCAGAGGGAAAGTCTTGATTTGAAGTTGACACAAGCTGAAAGTAACAAGTTGAATATTAGCGTTAATCCAAATGGTAGTGGTGATTTCAAGACCATCACTGAAGCTATCAACAGCATTCCAGCACCCAACAGCAGAAGAGTTGTTATCTTCATTGCGCCCGGTCTTTATAgAACACGGCATCACCTCGTCCTGGATCAAAAAATGATCAAGCCGTTGCTCTGCGCATCTCCGGAACCAAGGGTTTTCAATAGCGAGTTCAAGGGTTTTCAAGACACACTTTATGATGACAAAGGACTCCATTACTTCAAAGATTGCATGATTCAAGGCAGTGTTGATTTCATCTTTGGAGACGGGAGGTCCCTTTATGAGGGTTGCACTATAAAATCCATAGCCCAAAAAACGGGTTTTATCACAGCTCAAAAGCGCTCAAGTTTGACAGCCAGTGATAGTgggttttcaattttaaattgcaaAGTAATTGGTACTGGTCAAATTTATTTGGGAAGACCATGGGGAAATTACTCGAGAGTAGTTTTCTCCTATACTTATATCGACACTTTGGTCCTCCCACAAGGATGGATTGACACCATGGATGGAAACCACCATAACTtGACCGTATTCTATGGAGAATATAAGTGTAGTGGACCAGGATCAAATCTTGCTGGAAGACCTGCATGGATAAAGAGATTATCAGACAATGATGCCAAAGAATTTACCGGGGTGCATTTCATAGATGGGGAGACTTGGCTCCAGGGACCGAGCTATATATGA 1014 0.4103 MASWYVILLLITVLCFHAKAQPLQTSIDGNASNTLEVKRHEGPGVPLKRDEAITADAAITDQVLNSSLENVSQSLVSKEEMQRESLDLKLTQAESNKLNISVNPNGSGDFKTITEAINSIPAPNSRRVVIFIAPGLYRTRHHLVLDQKMIKPLLCASPEPRVFNSEFKGFQDTLYDDKGLHYFKDCMIQGSVDFIFGDGRSLYEGCTIKSIAQKTGFITAQKRSSLTASDSGFSILNCKVIGTGQIYLGRPWGNYSRVVFSYTYIDTLVLPQGWIDTMDGNHHNLTVFYGEYKCSGPGSNLAGRPAWIKRLSDNDAKEFTGVHFIDGETWLQGPSYI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02944 337 Gene3D - 153 335 IPR012334 -
Tsu03g02944 337 Gene3D - 48 150 IPR012334 -
Tsu03g02944 337 PANTHER PECTINESTERASE 160 331 - -
Tsu03g02944 337 PANTHER PECTINESTERASE 69 143 - -
Tsu03g02944 337 SUPERFAMILY Pectin lyase-like 98 332 IPR011050 -
Tsu03g02944 337 Coils Coil 76 96 - -
Tsu03g02944 337 ProSitePatterns Pectinesterase signature 2. 188 197 IPR033131 -
Tsu03g02944 337 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 69 143 - -
Tsu03g02944 337 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 160 331 - -
Tsu03g02944 337 Pfam Pectinesterase 162 328 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02944 Tsu-Chr3 40064640 40072491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02944 53 334 Carbohydrate Esterase AT5G07420 34.604 7.07e-57 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02944 K01051 - zju:107426082 222.246