Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02942 ATGGATCATTACAAGGTTTTAGGTTTACACAAAACAGCttcaaaagaagaaatcaaagcAGCATTCAAAAAATTAGCGTTTCAATTTCATCCAGATAAGCATTCTCAATCACCGAAATCCGTTAAAGACAACGCTACACTTCGATTCAAGCAGGTTTCTGAAGCATACGAAGTTCTCATGGATGATCGTAAACGCGCCGATTACAATTACCGGTGGCGGTCCGGCGCCGGAAGACAAAGTTCCGGTGCCGGTGGTAACAGTGGTAACTATTATTACTCTCAGTATAGTTATGGACATGGTAGAAGTGGGAGTGGTTATGAGTATAAAACTAGGTctaatggtggtggtggtggtggtggttttgCGTCGAAGTTTGAAGTTGTTATTCGGTTTTTGACGGCGAAATCTTCTCTTCTTAATCTTGGATTTGCAGCAGCTATATTAGGTGCGATGATCGTTGTTGATACAAGTGGAGAATCCTTATGGAAGATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAACACCATTGAGAAAACAAAATCGTATAAAGAAGATAACATGAATGAACATCCTTGA 582 0.3643 MDHYKVLGLHKTASKEEIKAAFKKLAFQFHPDKHSQSPKSVKDNATLRFKQVSEAYEVLMDDRKRADYNYRWRSGAGRQSSGAGGNSGNYYYSQYSYGHGRSGSGYEYKTRSNGGGGGGGFASKFEVVIRFLTAKSSLLNLGFAAAILGAMIVVDTSGESLWKMQNSGKSFEEAMNTIEKTKSYKEDNMNEHP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02942 193 SMART dnaj_3 1 64 IPR001623 -
Tsu03g02942 193 CDD DnaJ 2 61 IPR001623 -
Tsu03g02942 193 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Tsu03g02942 193 SUPERFAMILY Chaperone J-domain 1 97 IPR036869 -
Tsu03g02942 193 PRINTS DnaJ domain signature 64 83 IPR001623 -
Tsu03g02942 193 PRINTS DnaJ domain signature 4 22 IPR001623 -
Tsu03g02942 193 PRINTS DnaJ domain signature 22 37 IPR001623 -
Tsu03g02942 193 PRINTS DnaJ domain signature 44 64 IPR001623 -
Tsu03g02942 193 Gene3D DnaJ domain 1 128 IPR036869 -
Tsu03g02942 193 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Tsu03g02942 193 PANTHER CHAPERONE PROTEIN DNAJ 72 1 176 - -
Tsu03g02942 193 Pfam DnaJ domain 2 69 IPR001623 -
Tsu03g02942 193 PANTHER CO-CHAPERONE PROTEIN DJLA 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02942 Tsu-Chr3 39997362 40001509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02942 3 69 C2H2 Transcription Factor Family AT1G74250 41.791 2.02e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02942 - - lang:109336420 260.766