Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02938 ATGAATGGAAGAGAGATATCTACAATCTGGGAAGAGCTGGGCAACTTCTTTGAAGGTAACTCTAAAGGAGAGAAGGAAGCAAAGCTATCAAGCATCTCAGAACCTGAAGTGCAAACTGAACCTAAAGCAAAAGCAAaatctgaagtggactcagagtctaaACATGTAAGTTATGACGCTCTGAATCAGATTCCCAATGAAGGTTCCTACTATGCCTTCAGCCAATCTTCTGTGAAAGATTCAGAATTTCTCACAGATATGACCAAGAAATGCTATGAACAAGGGAAAAGGTGTGAGAGCAAAAAAATTGCTGACTTAAAGACAACTCAGAAGCTGTTGGCCAAGATCATGCTAGGGTCAATCTTTTCAagaagtggaagctctgatcaaatctcttgggatcatagacattttgtctattttctaaGTAGAAGAATGCAGCTCAACTGGCCaaaatacatctttaatcatctATGCAAGGCTGTttgtgctactcagaagcaaacCAAGTCAAACATTCATGTTGTGTACCAAAGGATTCTAAGTGAACTGTTTTATCAGCGTGGGGTAATAGATGTAATTAAAGATGTTGGTCAAGAGAATCTGATTAGAGAAATTAGAGCCACTGCTATCTCAGTGAACACTCTGTCCAACATGCATTTTCTACCTGGGCAAGTGTTGATATTGTCTGAACCATTGGAACAGCTACCACACTCTGGACTCTCTTTGGTAGCAAGGTTAAAGATTAACTTACCTTCTGTCACTGGAGGTATAGTTAACCAGTACATTCAGTTGCTGGAAAACCAAGGAGAAGCATATGAGATTGAGGATgaggaagtgaagaagaagaagaggaagagactGGTGAAAGCTGTTGAAAAGAGTTCTACTTTAAAGGTCGAGAGCAAGGGAAGGATAAGGACCAAGGCTGGAAGCTCAAAaggtgtgattatagtggatgATGCCGAGGAGGATGATAATGAACCTTTGAGGATAAAGAGAAAGAGaatttctaaggagctgaagaagaagactGCTGAGAGCTCTACTATTGCTGAAACAGATTGCGGAGACAACCTCAAAAAACCCAAGTTGCCCGGTCACTTCCGATCATGCTCCGCCACCAAGCTTTCGTGCATTGACTGTGGCCAAATGTTTGGTCAAGACACAGTTCTTAACCACTGTATTACAGAAGCGAAAAAGTATGGTCCACAAGGCCAAGGAAAAACTTTGAATGCTGCAGCTTCCAAGCCTGTCAAAGAAGGCAAACAAAGGTCAGTAGTTGATACTAATGTGGGTTTATCTCAACGTCCTCTGTGGTTCTGTAGTATCATGTCCGATCTTACTCTAGGTCTCATGTCTCTCAGCCTCGTCGACCTTGAAATTCTTGAACGTAGTGGTTCTTCTTCTGAGAAAAATCAAAGCCggtaa 1431 0.3606 MNGREISTIWEELGNFFEGNSKGEKEAKLSSISEPEVQTEPKAKAKSEVDSESKHVSYDALNQIPNEGSYYAFSQSSVKDSEFLTDMTKKCYEQGKRCESKKIADLKTTQKLLAKIMLGSIFSRSGSSDQISWDHRHFVYFLSRRMQLNWPKYIFNHLCKAVCATQKQTKSNIHVVYQRILSELFYQRGVIDVIKDVGQENLIREIRATAISVNTLSNMHFLPGQVLILSEPLEQLPHSGLSLVARLKINLPSVTGGIVNQYIQLLENQGEAYEIEDEEVKKKKRKRLVKAVEKSSTLKVESKGRIRTKAGSSKGVIIVDDAEEDDNEPLRIKRKRISKELKKKTAESSTIAETDCGDNLKKPKLPGHFRSCSATKLSCIDCGQMFGQDTVLNHCITEAKKYGPQGQGKTLNAAASKPVKEGKQRSVVDTNVGLSQRPLWFCSIMSDLTLGLMSLSLVDLEILERSGSSSEKNQSR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02938 476 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 355 444 IPR039999 GO:0003677
Tsu03g02938 476 Coils Coil 263 283 - -
Tsu03g02938 476 MobiDBLite consensus disorder prediction 27 50 - -
Tsu03g02938 476 Gene3D - 354 396 - -
Tsu03g02938 476 Pfam LYAR-type C2HC zinc finger 377 402 IPR014898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02938 Tsu-Chr3 39847369 39856206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02938 355 444 C2H2 Transcription Factor Family AT2G19380 51.087 7.28e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02938 K15263 - gmx:100790703 144.821