Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02933 atGGGAAGCAGAAAGGAAGAAGAGAAGATTGAGAAAATTATTAGGGGTCTTATGAAGCTTCCCCCAAATCGAAGATGTATCAACTGTAATAGTTTGGGACCTCAGTATGTATGTACAACATTTTGGACCTTCGTTTGCATTACTTGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGGCAAAGTTCACTTTCCAAGAAGTTGATGCTCTTCAAAATGGTGGTAATCAGCGTGCAAGggaaatatatttgaaaaattgggACTTCCAAATACAGCGGTTGCCAGATAGCAGCAATGTTGCTAAAGTGAGGGAGTTCATGAAGAATGTATATGTGGATAAAAGATATGCTGGAACAACGTTGTCTGAAAGACCCCCAAGAGATGCACAGAACTCCGCAATTCAAGAAGACGACATTAGGCGTGCCAGTTCTTACCATTCATATTCACAAAGCCCTCCATATGATAATCAATATGAGGATCGACGCTATGGAAAGCAAGCAGGGGCTCTGACGAGGAAGCCTGGTTCCGATAAAGTCCGTTATGAAGGGAAGATGTCTAGTATTATCTATAGTCCTGGCCGTTTCAGTGATCACACATATGATGATAGATTTGCAAATGAGGGATCTGGTCCAAGAAATTCCGACTTTTCCGTGTCAAGTGGTCATGAGCAATTCAAACCCAATGCATCTTATAAGCGTCCTGGTTCTAGTTCAAGCGAAGATGTGTGGACTCAAGCAAAAAATGCAGCTCTTGAATCTAATGCCGCTGCCAAGAGAGATGCGGATGGAATTCATCGTCCACAGAGAACTACATCATTGCAACCAACAGACAGCAACCTTTCGACCTTAAGGTCTTACAATTCTgttggttcatttgattttttctcCGAAGCTGTCCAATCTTCAGGGTCCCTTCAAGATAAAGCATTAGGAGTTTCAATGCCATCTGGTCCTGCAAGATCTGTTAGCTTTGACGTTTCCAAGGCACCAGTGGCATCAGCTTCATCTGTTGATCTTTTTCAAACAGCCGCACCATCTCAATCTGCATTGGGAGATCTGTTTCAATTATCTGATATGGAAGCAGCTCCATCTTTCAATGGAAATCAACCTCTGCAAACATCCCAAGTCGCATCTGTTAACTTCTTTGTAGATCTTCCTTCTGCTGCAACCTCCGATGCAAAATCAGTGGAGTTATCTATCCCTAAAAATGAAGGGTGGGCAACATTTGATACGCCTCAGTTCACATCATCTACTGCACAAGTGGAAGTTCCAGCAGCAGCATTTGATACACCTCAGTTCACATCATCTACTGCACAAGTGGAAATTCCTGCAGCAGCATTTGATACACCTCAGTTCACATCATCTACTGCACAAGTGGAAATTCCAGCAGCAGGACCTTCAAGTGCTGAATCTTTGCAGGGTAGATTTGATCCATTTTCAAATGCAAATATGCAATGGccatcttttgaaatttctAGTGCGGGTGTACCTTCTTCTGTTACATCTAATGTATGGCATGGTGGTGTATGGAATGGAGAAAAACAAGTTCCTGCTATGGCAACAGACACTCAACCATGGAATGCATTTGAAGATTCTGGTACCCATTTTCCTGTGGATGGAAATAGTCAAGGTTCACAATTGCACAATTTCCAATCAGAAAGTTTTGGCTTAAACACTTCTGAGagactCAATAAAGATGAAATCCAAGGTGTTGCTCCTAGCGGAGGATTTGATCATCATGAATTCCTATCAAATGGAGATATTCAACAAAATGGAATCAATCGAAAATCGACAAATCCATTTGATTTTCCCTTTGATTCTGATGTAGATCAGAGCGATATGTTCGTTGATATGAGCTCTTTGCAAGCTGCTCTGCCAGATGCCCTCTTGCCAGCCGCATTTGGTGGTATCGCTGAACCCTGGCTCCCTCAAAATACAGTGACTCCATATATTTCCTCTGCAGGAGAAGGAGGTTTGTCATTCTTGGTGCCAACGCCAACCTCTCAGTTACAGAACATCCAAGCACAGGAACCAGTTGCTTCGGTCGGGGGAAATCCTTTTGCATAG 2082 0.4164 MGSRKEEEKIEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCITCSGIHREFTHRVKSVSMAKFTFQEVDALQNGGNQRAREIYLKNWDFQIQRLPDSSNVAKVREFMKNVYVDKRYAGTTLSERPPRDAQNSAIQEDDIRRASSYHSYSQSPPYDNQYEDRRYGKQAGALTRKPGSDKVRYEGKMSSIIYSPGRFSDHTYDDRFANEGSGPRNSDFSVSSGHEQFKPNASYKRPGSSSSEDVWTQAKNAALESNAAAKRDADGIHRPQRTTSLQPTDSNLSTLRSYNSVGSFDFFSEAVQSSGSLQDKALGVSMPSGPARSVSFDVSKAPVASASSVDLFQTAAPSQSALGDLFQLSDMEAAPSFNGNQPLQTSQVASVNFFVDLPSAATSDAKSVELSIPKNEGWATFDTPQFTSSTAQVEVPAAAFDTPQFTSSTAQVEIPAAAFDTPQFTSSTAQVEIPAAGPSSAESLQGRFDPFSNANMQWPSFEISSAGVPSSVTSNVWHGGVWNGEKQVPAMATDTQPWNAFEDSGTHFPVDGNSQGSQLHNFQSESFGLNTSERLNKDEIQGVAPSGGFDHHEFLSNGDIQQNGINRKSTNPFDFPFDSDVDQSDMFVDMSSLQAALPDALLPAAFGGIAEPWLPQNTVTPYISSAGEGGLSFLVPTPTSQLQNIQAQEPVASVGGNPFA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02933 693 MobiDBLite consensus disorder prediction 205 285 - -
Tsu03g02933 693 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Tsu03g02933 693 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 132 IPR001164 GO:0005096
Tsu03g02933 693 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 693 - -
Tsu03g02933 693 CDD ArfGap_AGFG 15 121 - -
Tsu03g02933 693 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Tsu03g02933 693 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Tsu03g02933 693 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Tsu03g02933 693 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Tsu03g02933 693 PANTHER ARFGAP/RECO-RELATED 1 693 IPR044820 GO:0005096
Tsu03g02933 693 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Tsu03g02933 693 MobiDBLite consensus disorder prediction 126 165 - -
Tsu03g02933 693 MobiDBLite consensus disorder prediction 215 256 - -
Tsu03g02933 693 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02933 Tsu-Chr3 39561445 39570342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02933 14 88 C2H2 Transcription Factor Family AT4G05330 36.709 1.38e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02933 K15044 - gmx:100788316 920.998