Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02925 ATGAGTTCACTAAATTTTAACAATAACGGTTGTGGTTTTTCTTTGGACTTGAATGCTTCTTTGGAAACAGAGAAATTCGAGAACACTAATTATATTATTAGAGGTCATTGGACACTAACAGAAGATGATAAGCTTAAAAAGCTTGTTAAATACTTTGGTCCACACAATTGGAACCACATTGCTGAGCATTTTCATGGAAGATTAGGGAAAAGTTGCAGATTAAGATGGATTAATCACCTAGATCCTAAAATTAATAGATCAACATTCAGTGAAGAAGAGAAGGTGAAGCTTTTGGCTGCTCAAAAAGTTTATGGTAACAAATGGGCAACCATTTGCAAACTATTTCCTAGACGAACAGACAATCAACTTAAGAATAATTTTCATATGATGATGGCTAGGATGCAAAGGGGAAAATCATCATGTTTCTCTAGAATGAGAAATCCAATATTTCAAACCCCTCCAATAAATAATGTAGCTATTGAATCAATTACAAGTACAATTGATGTATGTAATTCAATTTACACACTTACTAGGCCTTTACTTAATTGTCAAGTCTATGGTTCACAAATGGttttacatGGAGAAAGGAAGGTGGAAGCGAGAAATTTTGGTTATGAAACCAATTTCAGTGCAATTGAAGGTTCATATGTAGGTCACGTGGGAAAGCTTAAGAGTGTGGACGAATCTAATTGttcatattcaaattcaaattcagaaaCTTCAGTGTCAGAATCAGTTGCAACAATAAGGACCAATGTATCGATTTTTGGGGAATGTGAAATTGTGAGGGGCAAGACTAAGGTGAAATTTAGCGACTTCCTTGGAATAGGTGATCATAAATAG 843 0.3369 MSSLNFNNNGCGFSLDLNASLETEKFENTNYIIRGHWTLTEDDKLKKLVKYFGPHNWNHIAEHFHGRLGKSCRLRWINHLDPKINRSTFSEEEKVKLLAAQKVYGNKWATICKLFPRRTDNQLKNNFHMMMARMQRGKSSCFSRMRNPIFQTPPINNVAIESITSTIDVCNSIYTLTRPLLNCQVYGSQMVLHGERKVEARNFGYETNFSAIEGSYVGHVGKLKSVDESNCSYSNSNSETSVSESVATIRTNVSIFGECEIVRGKTKVKFSDFLGIGDHK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02925 280 Gene3D - 33 85 - -
Tsu03g02925 280 Gene3D - 87 144 - -
Tsu03g02925 280 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Tsu03g02925 280 CDD SANT 37 80 IPR001005 -
Tsu03g02925 280 ProSiteProfiles Myb-like domain profile. 34 80 IPR001005 -
Tsu03g02925 280 Pfam Myb-like DNA-binding domain 37 96 - -
Tsu03g02925 280 CDD SANT 88 131 IPR001005 -
Tsu03g02925 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Tsu03g02925 280 PANTHER OS08G0435700 PROTEIN 22 278 - -
Tsu03g02925 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Tsu03g02925 280 SUPERFAMILY Homeodomain-like 33 127 IPR009057 -
Tsu03g02925 280 SMART sant 33 82 IPR001005 -
Tsu03g02925 280 SMART sant 85 133 IPR001005 -
Tsu03g02925 280 PANTHER MYB PROTEIN-RELATED 22 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02925 Tsu-Chr3 39499227 39500802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02925 32 156 MYB Transcription Factor Family AT1G69560 55.200 5.06e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g02925 Myb_DNA-bind_6 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02925 K09422 - jre:109000849 191.045