Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02924 ATGTCTGAAAAGTCCGAAATACCCTTTGATATTTTGAAACCTTTAGTGACCCATTCTCATGAGAAACTTGTTACAAACACTGAAGGGAATGAAGGGCATTTTTCcgatgagaaaaaaaatatgtctttGAAAGTTGATGAGGAGGAAAATGGAAGTAAAAATGTTACtttggaaacaaaaaaatttgggaACAATAATTCTTTTATTAGAGGTCATTGGACACCAACCGAAGATAATAAGCTTAAAAAACTTGTTGAAGAGTTTGGTCCTTACGATTGGAACAACATTGCTAAACATTTCCATCGAAGATCAGGGAGAACATGCAGATTAAGGTGGCGTAATCAACTACATCCTAAGATTAATAAATCATCTTTCAGTGAAGAGGAAGAGGTGAAGCTTTTGGCTGCTCAAAAATTTTATGGCAACAAATGGGCAACCATTTGCAAACTATTTCATGGAAGGTCAGACAATGCAGTTAAGAATCATTTTCATATTATGATGGCTAGGAGGCGAAAGGAGGCTAGAAAGAACAAGCTAGCTTGCACTAATATCTGCCTCTTTGATAGGTCTTTATTTAACAATCAAGCCTATGCTTCACAAATGGGTTTACTTGGAGAAAGGAAGGTGGAAGCCGTGGATTTTGGATATGATAACATTTTCAGTGCAATGAAAGGTTCATATGTACGTCACATGGGAAAGCTTAAGAGCCAGGACCAATTCAATTATTCAGATTCAAACTCAAAAGCTTCAGTATCAGAGTTAGTTGCAACAATTAGGCACAATGTATCGATTTTGGGGGAAAATGAAAATGTGAGAGATACAATTAAGGTGCCATTTATTGATTTCCTTGGAGTGGGTAATACATAG 867 0.3483 MSEKSEIPFDILKPLVTHSHEKLVTNTEGNEGHFSDEKKNMSLKVDEEENGSKNVTLETKKFGNNNSFIRGHWTPTEDNKLKKLVEEFGPYDWNNIAKHFHRRSGRTCRLRWRNQLHPKINKSSFSEEEEVKLLAAQKFYGNKWATICKLFHGRSDNAVKNHFHIMMARRRKEARKNKLACTNICLFDRSLFNNQAYASQMGLLGERKVEAVDFGYDNIFSAMKGSYVRHMGKLKSQDQFNYSDSNSKASVSELVATIRHNVSILGENENVRDTIKVPFIDFLGVGNT 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02924 288 CDD SANT 124 164 IPR001005 -
Tsu03g02924 288 ProSiteProfiles Myb-like domain profile. 65 116 IPR001005 -
Tsu03g02924 288 CDD SANT 73 114 IPR001005 -
Tsu03g02924 288 SUPERFAMILY Homeodomain-like 68 163 IPR009057 -
Tsu03g02924 288 PANTHER OS08G0435700 PROTEIN 17 180 - -
Tsu03g02924 288 PANTHER OS08G0435700 PROTEIN 193 288 - -
Tsu03g02924 288 Gene3D - 63 122 - -
Tsu03g02924 288 Gene3D - 123 183 - -
Tsu03g02924 288 PANTHER MYB PROTEIN-RELATED 193 288 - -
Tsu03g02924 288 PANTHER MYB PROTEIN-RELATED 17 180 - -
Tsu03g02924 288 ProSiteProfiles Myb-like domain profile. 117 167 IPR001005 -
Tsu03g02924 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 120 IPR017930 -
Tsu03g02924 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 171 IPR017930 -
Tsu03g02924 288 SMART sant 69 118 IPR001005 -
Tsu03g02924 288 SMART sant 121 169 IPR001005 -
Tsu03g02924 288 Pfam Myb-like DNA-binding domain 73 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02924 Tsu-Chr3 39472690 39474434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02924 70 288 MYB Transcription Factor Family AT1G17950 38.153 9.80e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g02924 Myb_DNA-bind_6 3.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02924 K09422 - jre:109000849 219.55