Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu03g02918 | ATGGatccaaatcaaaagaaaaatgtagaGCTCGTCGACAAAGTTTGGGAAGAACAATTCAAGAAAAATGGCGAGACTGCTGATTTGAAGACTCTTATTCCTATCTCCCGCGTTAAGGAGATCATGAAAGAGGAGGCGGATGTGGAGATTCCGAGTGAGACTTGTGTGTTCATGGCAAAAGCTTGTGAATTGTTCATTATGGATATGATAATGAGATCTATGGTCAAAATGAAAGAAGCTGGAAGGACAACACTTGAAGTCAATGACATGGTTGATACATTAGGTGATATTGATTTGGAGACTAAAATGAAGGATGAGAAAACTCAAGTTTCTCCAAATGAAgatgattaa | 351 | 0.3561 | MDPNQKKNVELVDKVWEEQFKKNGETADLKTLIPISRVKEIMKEEADVEIPSETCVFMAKACELFIMDMIMRSMVKMKEAGRTTLEVNDMVDTLGDIDLETKMKDEKTQVSPNEDD | 116 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu03g02918 | 116 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 8 | 93 | - | - | |
Tsu03g02918 | 116 | SUPERFAMILY | Histone-fold | 30 | 98 | IPR009072 | GO:0046982 | |
Tsu03g02918 | 116 | Pfam | Core histone H2A/H2B/H3/H4 | 17 | 90 | IPR007125 | GO:0003677 | |
Tsu03g02918 | 116 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED | 8 | 93 | - | - | |
Tsu03g02918 | 116 | Gene3D | Histone, subunit A | 2 | 101 | IPR009072 | GO:0046982 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu03g02918 | Tsu-Chr3 | 39361295 | 39361645 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu03g02918 | 14 | 99 | CCAAT-HAP5 Transcription Factor Family | AT1G54830 | 38.636 | 3.08e-14 | 64.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YC | Tsu03g02918 | Histone | 8.3e-11 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu03g02918 | K08066 | - | var:108342662 | 68.9366 |