Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02918 ATGGatccaaatcaaaagaaaaatgtagaGCTCGTCGACAAAGTTTGGGAAGAACAATTCAAGAAAAATGGCGAGACTGCTGATTTGAAGACTCTTATTCCTATCTCCCGCGTTAAGGAGATCATGAAAGAGGAGGCGGATGTGGAGATTCCGAGTGAGACTTGTGTGTTCATGGCAAAAGCTTGTGAATTGTTCATTATGGATATGATAATGAGATCTATGGTCAAAATGAAAGAAGCTGGAAGGACAACACTTGAAGTCAATGACATGGTTGATACATTAGGTGATATTGATTTGGAGACTAAAATGAAGGATGAGAAAACTCAAGTTTCTCCAAATGAAgatgattaa 351 0.3561 MDPNQKKNVELVDKVWEEQFKKNGETADLKTLIPISRVKEIMKEEADVEIPSETCVFMAKACELFIMDMIMRSMVKMKEAGRTTLEVNDMVDTLGDIDLETKMKDEKTQVSPNEDD 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02918 116 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 93 - -
Tsu03g02918 116 SUPERFAMILY Histone-fold 30 98 IPR009072 GO:0046982
Tsu03g02918 116 Pfam Core histone H2A/H2B/H3/H4 17 90 IPR007125 GO:0003677
Tsu03g02918 116 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED 8 93 - -
Tsu03g02918 116 Gene3D Histone, subunit A 2 101 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02918 Tsu-Chr3 39361295 39361645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02918 14 99 CCAAT-HAP5 Transcription Factor Family AT1G54830 38.636 3.08e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu03g02918 Histone 8.3e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02918 K08066 - var:108342662 68.9366