Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02907 ATGGTGTTTTGTGATCACTGTTGTAGAAGTGTCGATGGAATGCGAGTTGATGATGGAAATTTATGTTGTGAGTATTGTGGGAAGCTGTTGgaagattattatttttctaatgaGGTGACTTTTGTGAAAAATGCTGCTGGACAGAGCAAATTATCTGGAAATTTGGTAAGGGGTGTTCACAATGACATCTCTGAATCACGTGCAAGGACTATAGAAAGAGCTAAAGATTATATCAGTAATCTAAGTCGCACCCTTGGAGTGGACGATGGAAGTATGGTTGACGAAGCTGTGGCCTTTTATACAATAGGACTAGAGCAAAAGTTTACAAAGGGACGAAAATCAGAACTTGTACAAGCTGCTTGTCTCTATATTGCATTCCGGGATAAACAGAAGCCATACCTTCTTAttgaattttcaaatattttaaggACAAATGTTTATGCGCTTGGTGCAGTTTTTTTGCAGCTTTGTAAATTGTTAAGGCTTCAAAATCATCCGATTGTTCAAAAGCCTGTTGATCCCAGTCTTTTTATTTCCAAATTTACGAATAATTTGTTAAAGCAGAGTAATATGGCCGTCTCAAACACTGCACTTAATATTATTGTCAGAATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTGGCGGAATATGCGGTGCAGCATTATACATGGCTGCTCTTGCACATGGTTTTACATGCTCTAAGTCAGATATTCTAAGAATCGTGCATGTATGTGATGCAACACTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAATCTTCCAGCTTGACCATTGATGAGTTGAATGCAATGGCAAAAGATTATGAAAGAACTCcgattaaaatacaaaatggtGAACTGGATAAAAAAGATCTACTGTGTCAGCACAAAGATAATGATGAAGTACCCCCCCACTTTGCACTCGGATTATGTAAAGCATGCTACCTGGATTTTGAGACACTCTCTGGTGGGCTCGATTGTGGTCATGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAGAGAACGGTAAAGTCACAATCCAAGGAGAATGCTAATCAATTGGAAGATGTAAGTACAACTAGGTTTTATGGAAGTATGCATTTACTTTTTTTGTTTAAAATGCTTTCAGGGGGCGATGAAGAATATGTGGCGACCAAAGGTGGTGAACATGGTAAGTCACATATAGAAGATGATATGAACGGAAAAACTCACGATGAATCAGAAAGTCTCTCGGATATTGATGATAAGGAGGTTGATGGCTATCTTCACAGcgaggaggaaaaaaaattcaagaaggAAATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTATTAAGGAAGCAGCTGCAGAAGCTGAAAGGAGAAAATTAGAGGaggaattaaaaaattgttctcCCGAATCTCTTGAAGCAAGAAACCTTGCTACATCTGTTGCTGCAGCCGTGGCAAAAGCCAGAAAGGAATTGAAGCAAAAACGAGCTCAAGAGGCAAAAAGTTTGGGTCCTGCTCAATCTGCTGTAGAGGCAACTAGTCGAATGTTGAAAACAAAGGAAGTTCAAGAGAATCATAAGAAAGCACGGGTTGATTCACCCTCAGACAATGATGATAATTTGGAATCGAAGTCAAAGCACAAAGTAAAGGAGGATGAATTGGTAACAGCCGATGAATTAGTTGATGATGCTGATATGGTTGGAGAATATGGTGACATGTTGTATCCAGAAAATGGATCGGAGACATATGACTATGAGGAAGGTGGTGGTTACGATGGATATGACGGATATGACGGTTTTTAG 1809 0.3814 MVFCDHCCRSVDGMRVDDGNLCCEYCGKLLEDYYFSNEVTFVKNAAGQSKLSGNLVRGVHNDISESRARTIERAKDYISNLSRTLGVDDGSMVDEAVAFYTIGLEQKFTKGRKSELVQAACLYIAFRDKQKPYLLIEFSNILRTNVYALGAVFLQLCKLLRLQNHPIVQKPVDPSLFISKFTNNLLKQSNMAVSNTALNIIVRMKRDWMQTGRKPGGICGAALYMAALAHGFTCSKSDILRIVHVCDATLTKRLVEFENTESSSLTIDELNAMAKDYERTPIKIQNGELDKKDLLCQHKDNDEVPPHFALGLCKACYLDFETLSGGLDCGHDPPAFQRAERERTVKSQSKENANQLEDVSTTRFYGSMHLLFLFKMLSGGDEEYVATKGGEHGKSHIEDDMNGKTHDESESLSDIDDKEVDGYLHSEEEKKFKKEIWEFNNREYLEEQAIKEAAAEAERRKLEEELKNCSPESLEARNLATSVAAAVAKARKELKQKRAQEAKSLGPAQSAVEATSRMLKTKEVQENHKKARVDSPSDNDDNLESKSKHKVKEDELVTADELVDDADMVGEYGDMLYPENGSETYDYEEGGGYDGYDGYDGF 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02907 602 CDD CYCLIN 173 258 IPR013763 -
Tsu03g02907 602 SMART cyclin_7 76 158 IPR013763 -
Tsu03g02907 602 SMART cyclin_7 176 259 IPR013763 -
Tsu03g02907 602 Gene3D - 63 165 - -
Tsu03g02907 602 Coils Coil 445 467 - -
Tsu03g02907 602 Gene3D - 173 264 - -
Tsu03g02907 602 Gene3D Single helix bin 404 456 - -
Tsu03g02907 602 MobiDBLite consensus disorder prediction 388 413 - -
Tsu03g02907 602 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Tsu03g02907 602 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Tsu03g02907 602 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Tsu03g02907 602 Pfam Brf1-like TBP-binding domain 413 525 IPR011665 -
Tsu03g02907 602 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 531 IPR029529 GO:0000126|GO:0000995|GO:0006383
Tsu03g02907 602 SUPERFAMILY Cyclin-like 73 163 IPR036915 -
Tsu03g02907 602 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Tsu03g02907 602 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Tsu03g02907 602 MobiDBLite consensus disorder prediction 519 557 - -
Tsu03g02907 602 SUPERFAMILY Cyclin-like 172 268 IPR036915 -
Tsu03g02907 602 MobiDBLite consensus disorder prediction 498 602 - -
Tsu03g02907 602 CDD CYCLIN 74 143 IPR013763 -
Tsu03g02907 602 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 531 IPR000812 GO:0006352|GO:0070897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02907 Tsu-Chr3 39162417 39176817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02907 1 522 Inorganic Solute Cotransporters AT2G01280 43.421 6.61e-117 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02907 K15196 - gmx:100789154 597.816