Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02903 ATGGACAAAGTGATATCAAATTGGACAATGGAATTTCTCCTTCAAAGCTGCATTCCCGATTCAATCATTCAAAAAACCCTAACCACCTTTCTTCCACATTCCACCGCCCATTCTCGTCTCAAAATAGCACTTCTCCTCCGCACTCTCCAAACTTCTCTCCTCAACGCTTCTCTCTCCGAAACCTCTCTCGAAATTCTCGAACACCTCGAAAATCTTTACCACAACGACGCAATTCCAATCTTGGATACAATGCGCAGTGCTTACTGTGCTGTTGCGGTGGAAAACACTGTTAAGTATCTTATTACTTGTCCTGAAAGTCCTTCCGGTGAGTACTTTTTTGCTGTTCGACGGATCTGGCGTGAAAGGGTTTGTCAATTGTCGGCGGAGGAACGGAGGAGTAAGCTTATGTCTGATGAGTTGGTTCAGTGGAAACAAGAAGTTGAAGCTGCGCTTTTTGATGCTGGAGTTTCGGAGAGGCTTATTGGGTTGAATACAAGGAGAGATGctatgaatgaaatgaagagGTTTTTGAAGGAAGCTTGGGGAATTATTGGACTTTCGTTTATTGATTCGATGGAGTTGGTTTCTGATGGGGAGGGTTTACGCACTGAAGGTGTTTGTGAAATTGCGAAGAAGTGTGATGGAATGTTAGAAGGTTTGGAAAAGGAGAAAATGAACTCTGTTGGTGATGATGAGAAGGATAACAAGAATGAGAATGTGAATGATAATGtgaatgatgatggtgatgtgGCGACAATGGGCGAAAATCATGGCAATGAGCAATTGGAAAAGAGAGTTGGGACTTCTAATGATGCAAATCAGGAAGTGGGTGGATGTGATTCTTCGAAAGGAGATAAagAAATCCGGAAAGACAATCTTCAACGCAAACGCAAGCACTCTGCAATTCGAACACACCACAAGGGAGTTAGAATCTCTGGTGCTGAGGAAGCGCCGGAGGtagcaaaaacaacaaatttgtCGTGTAAATGTGAAAGCTTGTCTAGTGGTGAAGTAAAAAAAGTTCGGGAATCCCTTAAATCAAGTTCTATGGAGTTAAAGGCAATGGTCAAGGATCCTCTTCCTGATGCATTGCAGGCATCTGAAGTTGTAAGATCCAAATTGGCTACAAAAGATATAAATCACAGGCCACCCATTGAAAACCAGAGTGGAAATGTAGATGTACCAGATTTAACTGCATGCAAAACTTTTATACTTTATCAGCCTAATGATGTCAATCCTGGAAAGAAGTCTTCTGTTCattgtagtagtagtagtagtcgTCGTCGCCCCAAGTTAATGGAACGGGGAAGTTCTGTTCATACTTTCGAGTGGAATGATTCAATAGAGAACTTACCGCTgccaaaaaagaagaaaaggagaTGGACTTCATTGGAAGAGGAGACACTAAGGGCTGGTGTaaaaatGTTTGGCGAAGGAAGCTGGAGTGCAATCCGAAAATTTTACAGCAACATATTTGAATTGAGAAGTGCAgTTGATTTGAAGGACAAGTGGAGAAATTTGATTCAGTGA 1530 0.3941 MDKVISNWTMEFLLQSCIPDSIIQKTLTTFLPHSTAHSRLKIALLLRTLQTSLLNASLSETSLEILEHLENLYHNDAIPILDTMRSAYCAVAVENTVKYLITCPESPSGEYFFAVRRIWRERVCQLSAEERRSKLMSDELVQWKQEVEAALFDAGVSERLIGLNTRRDAMNEMKRFLKEAWGIIGLSFIDSMELVSDGEGLRTEGVCEIAKKCDGMLEGLEKEKMNSVGDDEKDNKNENVNDNVNDDGDVATMGENHGNEQLEKRVGTSNDANQEVGGCDSSKGDKEIRKDNLQRKRKHSAIRTHHKGVRISGAEEAPEVAKTTNLSCKCESLSSGEVKKVRESLKSSSMELKAMVKDPLPDALQASEVVRSKLATKDINHRPPIENQSGNVDVPDLTACKTFILYQPNDVNPGKKSSVHCSSSSSRRRPKLMERGSSVHTFEWNDSIENLPLPKKKKRRWTSLEEETLRAGVKMFGEGSWSAIRKFYSNIFELRSAVDLKDKWRNLIQ 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02903 509 MobiDBLite consensus disorder prediction 413 433 - -
Tsu03g02903 509 Pfam Myb-like DNA-binding domain 458 507 IPR001005 -
Tsu03g02903 509 CDD SANT_TRF 459 508 - -
Tsu03g02903 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 453 509 IPR017930 -
Tsu03g02903 509 PANTHER MYB TRANSCRIPTION FACTOR 1 508 - -
Tsu03g02903 509 MobiDBLite consensus disorder prediction 280 294 - -
Tsu03g02903 509 SMART sant 457 509 IPR001005 -
Tsu03g02903 509 Gene3D - 461 509 - -
Tsu03g02903 509 MobiDBLite consensus disorder prediction 224 243 - -
Tsu03g02903 509 PANTHER MYB TRANSCRIPTION FACTOR 1 508 - -
Tsu03g02903 509 ProSiteProfiles Myb-like domain profile. 453 508 IPR001005 -
Tsu03g02903 509 SUPERFAMILY Homeodomain-like 455 508 IPR009057 -
Tsu03g02903 509 MobiDBLite consensus disorder prediction 224 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02903 Tsu-Chr3 39089831 39092750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02903 461 508 Single Myb Histone (SMH) Gene Family AT1G15720 56.250 4.40e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g02903 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02903 - K11111 aprc:113849788 469.929