Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02897 atgTTGTGGGTAGACAAATATCGTCCCAAAACCCTAGACAATGTCATGGTTCACAATGATACCGCTCTTAATCTCAAGAAATTGGTTTCAGAACATGATTGCCCCCATTTGCTTTTCTATGGTCCATCGGGTTCTGGAAAGAAAACCCTAATCATGGCTCTTCTTCGCCAAATGTTTGGACCCGGTGCCGAAAagGTGAAGGTGGAAAATAGGGCGTGGAAAGTGGATGCCGGGAGTAGATCTATTGAGTTAGAGCTGACAACGTTATCAAGTGCGAATCATATCGAATTGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAAAATAGACCAATTGATACTAATACTAAAGGGAAGAAAGGATTTAAAGTGCTAGTGCTTAATGATGTGGACAAACTGTCTAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATTTTATGTTGCAATAGTTCTTCAAGAGTTACTGAAGCCATCCGCTCTCGTTGTCTTAATGTACGAATAAATGCACCAAGTGAAGAACAGATTGTTGAAGTCTTACAGTTCATTGGTAAGAAAGAAGGGCTGCTACTTCCTTCTAGTTTTGCTGCTCGTATAGCTGAGAAATCAAATCGGAATTTGAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACTGACAAGCAGACAATTCCCGCAATGGACTGGGAGGAATATATTTCAGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTTCTAATCAATTGCATTCCTCCAGAGATCATTTTGAAGAGGCTACTATATGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTCTGCCACTGGGCAGCATATTATGAACATAGGATGCGCCTTGGACAGAAAGCCATTTTTCACATCGAAGCTTTCGTGGCCAAGTTCATGAGTGTCTATAAATCCTTCCTCATTGCAACATTTGGCTGA 1071 0.409 MLWVDKYRPKTLDNVMVHNDTALNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIELELTTLSSANHIELTPSDAGFQDRYIVQEIIKEMAKNRPIDTNTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLLLPSSFAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPAMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02897 356 Pfam DNA polymerase III, delta subunit 24 190 - -
Tsu03g02897 356 Gene3D - 192 250 - -
Tsu03g02897 356 CDD AAA 25 192 - -
Tsu03g02897 356 SMART AAA_5 33 194 IPR003593 -
Tsu03g02897 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 239 IPR027417 -
Tsu03g02897 356 Gene3D - 1 191 IPR027417 -
Tsu03g02897 356 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 348 - -
Tsu03g02897 356 SUPERFAMILY post-AAA+ oligomerization domain-like 253 348 IPR008921 GO:0003677|GO:0006260
Tsu03g02897 356 Gene3D - 254 347 - -
Tsu03g02897 356 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02897 Tsu-Chr3 39028680 39034919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02897 1 356 Core DNA Replication Machinery Family AT5G27740 83.708 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02897 K10756 - gmx:100818329 650.588