Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02887 ATGAAGACAGAAACACAAATGAAGATTCCGAAGACAACGACGATGGATGATATCAGCAGCAGTAATAATCCAAACTCTTCATCATTTCTCGTTCAAAACTCCGACCTAATCCTACCATGGCTAACCCATCAACAACTCGCCAATCTCTCTTTAACCTGCAAATCTCTCCACAATCTCACCAAAATCATAACCCTAATTCGTATCTCCGATGCTTCTAGAACCTTCGAGAATTTCCCAATCCCATTCCACAACAATTGTATCAACAACAATCACAATCTCAACAATCATCCTTATTCCTACTTTCTCTACACACCTTCACTCATtctatccaacaatctccctcGTTATCAACCATGGGGATGGATGGGTAGTTCTGTAATTTCACCAATTGCGGTTAAAACAGTTGATGAATCGGAATCAGTGAGTTTTGTTGATGTGGTTGGTTGTGAGTGTGGTGAGGTTTGTGATGATGATGGGTGTTTGTGTTTTGATGGTGGGGATGGTGATGTTGGAATTGGAAGAGAGTGTGGGGTGGGTTGTTCTTGTGGGAGGGAGTGTGGGAATAGAGTGAGTCAAAATGgggttagggttagggttaagATTGTTAGGTGTGATGGGAAAGGGTGGGGTTTGTTTGCAGATCAAGTAATTGCTAAAGGAGAGTTTTTGTTTCAATATGCAGGTGAACTATTGACAACCAAGGAAGCACAGAGGAGACAACAATATTATGATGAACTGTCATCACGCGGTCGTTTCTCTTCCGCTCTTTTAGTTGTAAGAGAACATCTTCCATCTGGAAAGGCATGTTTGCGATTGAACATAGATGCAACAAAAATAGGAAACGTTGCACGGTTTGTAAATCATTCGTGTGATGGTGGTAATTTAAGCACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTTTGCTTCTTTGCTTTGAAAGATATCCAAAAAGACGAAGAGCTTACTTTCAGCTACGGAGAAATCAGGAAAAGGTCCAACGGGTTGCCATGCTACTGCAACTGCCCTTCTTGCTTTGGAACATTGCCCTCCGAAGACACTTAA 1071 0.4024 MKTETQMKIPKTTTMDDISSSNNPNSSSFLVQNSDLILPWLTHQQLANLSLTCKSLHNLTKIITLIRISDASRTFENFPIPFHNNCINNNHNLNNHPYSYFLYTPSLILSNNLPRYQPWGWMGSSVISPIAVKTVDESESVSFVDVVGCECGEVCDDDGCLCFDGGDGDVGIGRECGVGCSCGRECGNRVSQNGVRVRVKIVRCDGKGWGLFADQVIAKGEFLFQYAGELLTTKEAQRRQQYYDELSSRGRFSSALLVVREHLPSGKACLRLNIDATKIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFALKDIQKDEELTFSYGEIRKRSNGLPCYCNCPSCFGTLPSEDT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02887 356 SMART set_7 197 335 IPR001214 GO:0005515
Tsu03g02887 356 ProSiteProfiles SET domain profile. 197 329 IPR001214 GO:0005515
Tsu03g02887 356 SUPERFAMILY SET domain 78 349 IPR046341 -
Tsu03g02887 356 Gene3D SET domain 51 337 IPR046341 -
Tsu03g02887 356 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 24 344 - -
Tsu03g02887 356 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 24 344 - -
Tsu03g02887 356 Pfam SET domain 208 329 IPR001214 GO:0005515
Tsu03g02887 356 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02887 Tsu-Chr3 38950110 38952808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02887 175 351 C2H2 Transcription Factor Family AT2G23740 35.326 4.47e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu03g02887 SET 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02887 K11433 - gmx:100786871 412.535