Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02886 ATGGCCGAGTCACAACGTGGTGGTGTTAGAGTGCCATGTGGGGCTTGCAAGTACTTGAAGAAGAAGTGTACTAGTGGATGTATCTTCGCACCCTACTTTGGTACAGAACAAGGTGCAGCTAGCTTTGCAGCTGTGCACAAAGTGTTTGGTGCTAGCAATGTGTCAAAGCTCTTGTCCAACGTTTCAACAAACCACCGCCACGAAGCAGTGGCGACTATATCCTATGAGGCTCAGGCTAGGCTATCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAGCAACAGGTGGCAACAATGCAAGCAGAGATCTCAATGATGCAAACTGAGCTGATGAACAGAGGATTTACATGTGCAAATGCTCTTCAAAACAACACCCCAGCATCAGATGCTACAGCAAACAAACTTCAACGTAGCAGTGCAGCCAGTATATTCCAACAATTCATATGCTCTCACCAACAACAACCCCATGAACATGAACAACTTCAACCCTAG 501 0.4651 MAESQRGGVRVPCGACKYLKKKCTSGCIFAPYFGTEQGAASFAAVHKVFGASNVSKLLSNVSTNHRHEAVATISYEAQARLSDPVYGCVSTILALQQQVATMQAEISMMQTELMNRGFTCANALQNNTPASDATANKLQRSSAASIFQQFICSHQQQPHEHEQLQP 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02886 166 Coils Coil 92 112 - -
Tsu03g02886 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 8 141 - -
Tsu03g02886 166 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 141 - -
Tsu03g02886 166 Pfam Lateral organ boundaries (LOB) domain 12 110 IPR004883 -
Tsu03g02886 166 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02886 Tsu-Chr3 38941118 38949301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02886 12 122 AS2 family AT3G03760 73.874 5.24e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g02886 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02886 - - aprc:113866578 192.971