Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02867 atgGATAGACTCATAAGATTAGAACCATCAAACATAGTACTAATAAGAGTTGAACAAGGGCAAAAGTGTCAAGGAAAAATAACCTTAAACAATGTCATGTATACTATGCCAGTTGCATTTAGGATTCAACCACTAATCAAAACAAGATATACAATTAAACCACAATCAGGAATAATTTCACCATTAGCATCACTAATCATAGAGATAACATATCATCCTCCACAACAACAAGGTTCAAATAATAATCTTCCTCACTCTTTTCCCTTTTCAGATGATTCATTTCTTCTCCATAGTGTTCTTGCTCCAGGAGCAGCCATTAAAGAACCTTCATCCATGTTTGATTCTGTTCCAAGTGATTGGTTCACTACcaaaagaaaacaagttttcatTGATAGTGCAATCAAAATCATGTTTGTTGGTTCACAAATTTTGACTCAACTTGTTGAAGATGGTAACTCAATGGATGATATAAGAGATGTTCTTGAAAAAAGTGATCCTTTATGGGAATCAATTAACTCTAGAGATTCAAAAGGTCAAACTTTACTTCATTTGGCTATTTCGAAAAATAGACCTGATCTTGTTCAATTGATTCTTGAATTCAAGCCTGATATTGAAGCTACAAATAGTGTTGGATCAACTCCTCTTGAGGCTGCATCTTCCTCGGGCGACTCGTTAATTGTTGAGCTTCTTTTAGCTCATAAGGCCAACACAGAAGGATCAGAATCTTCTGTCTTTCGACCAATTCATCATGCCTCGAGAGAAGGACATATGGAGATTCTAAGGCTTCTTTTACTCAAAGGTGCAAAAGTTGACTCTTTAACAAAAGATGGTAACACTTCTTTGCATTTAGCtgttgaagaaaaaagaagagattgTGCTAGGCTTTTGTTAGCAAATGGTGCGAGAACCGATGTTCGAAATACAAGAGAAGGTGATACACCTTTACACATAGCAGCAGCCAATGGAGATGAGAACATGGTGAAGTTACTACTTCATAAAGGAGCTACAAAATATGTGAGAAACAAACTAGGGAAAACAGCGTTCGATGTTGCGGCTGAGAACGGACACTCGCGCCTATTCGATGCACTTCGTTTAGGGGACAATTTATGCGCGGCTGCACGAAAAGGTGAGGTAAGGACAATCCAGAAGGTTTTGGAAAGTGGTGGAGTGATTAATGGAAGGGATCAAAATGGATGGACATCACTTCATAGGGCTTCATTCAAAGGAAGAATGGATGCTGTTAGGTTTCTTGTGGAGAAAGGTATTGATTTGGATGCAAAAGATGAAGATGGTTATACAGCTTTGCATTGTGCAGCTGAATCAGGACATGCTGATGTTACTGAGTTTTTGGTTAAGAAAGGTGCTGATGTTGAAGCAAGGACTAATAAAGGTGTGAGTGCTTTGCAAATTGTTGAGTCATTGAACTATGTAGGGATTACAAGGATACTTGTTAATGGTGGTGCTAGTAGGGAAGGTTTGGGTGAAAAATTTCCATCTGCACCTTCTAAGATTCCATTTGGGAGTAAAGTTGAAGGTGGGGGTGTGATGacgatgaagaagaagatgagtaGTAGAACTCGAGCGCTAAGAGGTAGTTTCGACCGTTCGATGCCTTTAGCAGTGCTCTAG 1629 0.3745 MDRLIRLEPSNIVLIRVEQGQKCQGKITLNNVMYTMPVAFRIQPLIKTRYTIKPQSGIISPLASLIIEITYHPPQQQGSNNNLPHSFPFSDDSFLLHSVLAPGAAIKEPSSMFDSVPSDWFTTKRKQVFIDSAIKIMFVGSQILTQLVEDGNSMDDIRDVLEKSDPLWESINSRDSKGQTLLHLAISKNRPDLVQLILEFKPDIEATNSVGSTPLEAASSSGDSLIVELLLAHKANTEGSESSVFRPIHHASREGHMEILRLLLLKGAKVDSLTKDGNTSLHLAVEEKRRDCARLLLANGARTDVRNTREGDTPLHIAAANGDENMVKLLLHKGATKYVRNKLGKTAFDVAAENGHSRLFDALRLGDNLCAAARKGEVRTIQKVLESGGVINGRDQNGWTSLHRASFKGRMDAVRFLVEKGIDLDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEARTNKGVSALQIVESLNYVGITRILVNGGASREGLGEKFPSAPSKIPFGSKVEGGGVMTMKKKMSSRTRALRGSFDRSMPLAVL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02867 542 Pfam MSP (Major sperm protein) domain 5 112 IPR000535 -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat profile. 310 342 IPR002110 GO:0005515
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat region circular profile. 210 236 - -
Tsu03g02867 542 Pfam Ankyrin repeats (3 copies) 370 460 IPR002110 GO:0005515
Tsu03g02867 542 Pfam Ankyrin repeats (3 copies) 247 306 IPR002110 GO:0005515
Tsu03g02867 542 Pfam Ankyrin repeats (3 copies) 172 236 IPR002110 GO:0005515
Tsu03g02867 542 Pfam Ankyrin repeat 311 335 IPR002110 GO:0005515
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat profile. 210 242 IPR002110 GO:0005515
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat region circular profile. 243 271 - -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat profile. 243 275 IPR002110 GO:0005515
Tsu03g02867 542 SUPERFAMILY PapD-like 2 152 IPR008962 -
Tsu03g02867 542 Gene3D - 242 314 IPR036770 -
Tsu03g02867 542 PRINTS Ankyrin repeat signature 311 326 IPR002110 GO:0005515
Tsu03g02867 542 PRINTS Ankyrin repeat signature 446 460 IPR002110 GO:0005515
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat profile. 397 429 IPR002110 GO:0005515
Tsu03g02867 542 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 542 - -
Tsu03g02867 542 Gene3D - 132 241 IPR036770 -
Tsu03g02867 542 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 139 IPR000535 -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat region circular profile. 397 429 - -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat region circular profile. 177 208 - -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat region circular profile. 430 462 - -
Tsu03g02867 542 SMART ANK_2a 343 372 IPR002110 GO:0005515
Tsu03g02867 542 SMART ANK_2a 243 272 IPR002110 GO:0005515
Tsu03g02867 542 SMART ANK_2a 177 206 IPR002110 GO:0005515
Tsu03g02867 542 SMART ANK_2a 276 305 IPR002110 GO:0005515
Tsu03g02867 542 SMART ANK_2a 430 459 IPR002110 GO:0005515
Tsu03g02867 542 SMART ANK_2a 310 339 IPR002110 GO:0005515
Tsu03g02867 542 SMART ANK_2a 397 426 IPR002110 GO:0005515
Tsu03g02867 542 SMART ANK_2a 210 239 IPR002110 GO:0005515
Tsu03g02867 542 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 542 - -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat profile. 276 308 IPR002110 GO:0005515
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat region circular profile. 276 307 - -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Tsu03g02867 542 Gene3D - 315 362 IPR036770 -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat profile. 430 462 IPR002110 GO:0005515
Tsu03g02867 542 Gene3D Immunoglobulins 1 129 IPR013783 -
Tsu03g02867 542 Gene3D - 363 493 IPR036770 -
Tsu03g02867 542 ProSiteProfiles Ankyrin repeat region circular profile. 310 335 - -
Tsu03g02867 542 SUPERFAMILY Ankyrin repeat 171 491 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02867 Tsu-Chr3 38720779 38722407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02867 368 470 Ion Channels AT4G32500 32.039 3.80e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02867 - - gmx:100782444 766.533