Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02841 ATGGAAATTCAATTTGAGGAACCAAAGAAGAGTTTGAGACCAAAAAGAGGTAACAAATTCAAAGGGAGAAACAAAAAgattgaaacaaaaaacaagTTTATTGGGGTGAGACAAAGACCATCAGGTAGATATGTTGCTGAGATTAAGGACACAACACAAAACATAAGAATGTGGCTTGGAACATTTGAAACAGCCGAGGAAGCTGCGAAAGCTTACGATGAAGCCGCCACACTTCTTCGTGGTTCCAACACTCGCACCAACTTCGTCACATATGTTTCCTATGATTCGCCTCTCGCTTCTCGGATTCAAAGTCTTCTCAACGAACGAGGAAAAGGTACCaaacaacaagaagaagataTGGATATCAGAAGAAGCACCACCAATCGTGCTAATACAGCTAGTGGTACTACTAATAGGACTAGGACCGATAGCACCACTAACAATACTAGCACGACTCGAGGTTCTGTTAAAAGTACTAGTGCTAGGACTAGAAGTGTTGCTAGCACTAATACTGATATTAGCGGTATTACTAATAGTACTAGTGCTAGCAGCGTGACTAGCACTAGTACTGTTATTAGTACTAATTCGAGCGATAACAGCATTCATGAAAACAATGAAAACACGATTTCTAATGTGACcacaatacaaaacaaaaaattaattgagGATGCATATAGGCCAGATTTGAGCATTTTAAATGAGCATGAGTCAAGTTTCAATAAGTCCAATGTTTCATGGGATTTTGGAcctatttttgataattttccTTTTGGTCAAGGATTGGATATGAAAAACCATGATGGAATATTGTGTGATATGGTTGACTTAGGGGTTTCAGAATTTGAAAGGATGAAAGTTGAAAGGCAGATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAATACATGGAAACTGTTCAAGATTCCAATGAAGCTCCATGGAATCTTTCACCCTTGTGttcatttttatgttcaaaCAAACAACATATATGA 996 0.3524 MEIQFEEPKKSLRPKRGNKFKGRNKKIETKNKFIGVRQRPSGRYVAEIKDTTQNIRMWLGTFETAEEAAKAYDEAATLLRGSNTRTNFVTYVSYDSPLASRIQSLLNERGKGTKQQEEDMDIRRSTTNRANTASGTTNRTRTDSTTNNTSTTRGSVKSTSARTRSVASTNTDISGITNSTSASSVTSTSTVISTNSSDNSIHENNENTISNVTTIQNKKLIEDAYRPDLSILNEHESSFNKSNVSWDFGPIFDNFPFGQGLDMKNHDGILCDMVDLGVSEFERMKVERQISASLYAINGVQEYMETVQDSNEAPWNLSPLCSFLCSNKQHI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02841 331 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Tsu03g02841 331 MobiDBLite consensus disorder prediction 1 20 - -
Tsu03g02841 331 MobiDBLite consensus disorder prediction 126 205 - -
Tsu03g02841 331 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Tsu03g02841 331 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 312 - -
Tsu03g02841 331 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Tsu03g02841 331 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Tsu03g02841 331 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Tsu03g02841 331 MobiDBLite consensus disorder prediction 111 125 - -
Tsu03g02841 331 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 14 312 - -
Tsu03g02841 331 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Tsu03g02841 331 SMART rav1_2 32 96 IPR001471 GO:0003700|GO:0006355
Tsu03g02841 331 MobiDBLite consensus disorder prediction 107 205 - -
Tsu03g02841 331 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02841 Tsu-Chr3 38455940 38456935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02841 221 325 AP2-EREBP Transcription Factor Family AT5G19790 31.304 2.93e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu03g02841 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02841 K09286 - gmx:100796898 283.493