Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02827 ATGGGAGTGTGCCCTACTGATTTTGATGTGTCTGTTTTGAATCATCTCGATAATGCTCCTTCGCAACTACACCCTCTAGTTTGTGAGACAACGCCAGACCCAAGTGATCCTTCTGGGAGGAAGCGAATTGGTACTCCTCGTTATGTAGATATACGTCTAATGTTGTCGGAGAAGACAATCAAAGGAAGACAATCTCTTTGCCGCAAGTTTTTGTTGGCGAGGAGGGCTGCCTTGGATCAGTGTCCACCCGTTAAGCCTGTTAAAGTTGTTGTTCTGAAACCGAAAGTTGGAAATTCTTCCCCTGTCGCTAGGGAGGACCTTCCCTGTGTGACTATTGGAGGTTCTTCGTCTACCAAGAGGAGGAGTCTTCCTGGTATAAAGATTGGGAGTTCTCCGTCTAGTAAGAAGGAAGACAGAACTCTTGAAGACGGGAACCTAGCTAGCATAAGAAAATTGTGGTTGTTAATTCAGTTGTTCAGTTTGATCATAAAATCTGAGGTAATCTCCCAAATCTACCACACTACTAAAGCTGTTGCAATGGAGGGTCTCCCTCATCCTCATGTAGCTCTTGCAATCTCAACTGATACTTCTCACAGCCGCAAAGGGCTCTGGACCTATGATGAGGACAAGACTCTTGTTGAATCGCTGAAGCAACATGGGCCGAAGAGTTGGTCTCAAATACCAAACCCGATGAAGAGAAAGCTTGAAAAGCAGTGTCGTGAGAGATGGTTCAATCATCTTTGCCCAAACATTATGAAAGACCCATGGACTGTAGAGGAAGACATGATGCTGATAAAATCCCATAAAGTATTTGgaaacaaatcaaaacagaTTGCAAAGACATTGTTGGGTAGGAGTGAGAACTCCATCAAGAACCATTGGAACGCTACCAGGCGATGCCAAAGAATCAGTaggatgaaaaataaaaacccCGAAATCACTAATGATGGATCACTACTTCATGCATACATCAAAGAGGTAACAAACTCCGAAGAGGTTGAAAATGAGTTGAGGAAAAAAACAAGCGAGATGTCATTAGATGATAGTTTAAGCTCTAAAGGTCTTATTGGAAATGGTGAAGGAACTACCGCTGCAAATGTGATTAATGGCGAAAATATCAAGTGTGGTGCAATTGTGGAGGAGTTGAACATGGACATGGATTTCATGGAGATTATAAGTGAAAAATAG 1188 0.4167 MGVCPTDFDVSVLNHLDNAPSQLHPLVCETTPDPSDPSGRKRIGTPRYVDIRLMLSEKTIKGRQSLCRKFLLARRAALDQCPPVKPVKVVVLKPKVGNSSPVAREDLPCVTIGGSSSTKRRSLPGIKIGSSPSSKKEDRTLEDGNLASIRKLWLLIQLFSLIIKSEVISQIYHTTKAVAMEGLPHPHVALAISTDTSHSRKGLWTYDEDKTLVESLKQHGPKSWSQIPNPMKRKLEKQCRERWFNHLCPNIMKDPWTVEEDMMLIKSHKVFGNKSKQIAKTLLGRSENSIKNHWNATRRCQRISRMKNKNPEITNDGSLLHAYIKEVTNSEEVENELRKKTSEMSLDDSLSSKGLIGNGEGTTAANVINGENIKCGAIVEELNMDMDFMEIISEK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02827 395 MobiDBLite consensus disorder prediction 111 129 - -
Tsu03g02827 395 ProSiteProfiles Myb-like domain profile. 248 298 IPR001005 -
Tsu03g02827 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 251 IPR017930 -
Tsu03g02827 395 Pfam Myb-like DNA-binding domain 204 262 - -
Tsu03g02827 395 Gene3D - 255 297 - -
Tsu03g02827 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 253 302 IPR017930 -
Tsu03g02827 395 CDD SANT 255 295 IPR001005 -
Tsu03g02827 395 CDD SANT 204 247 IPR001005 -
Tsu03g02827 395 PANTHER MYB PROTEIN-RELATED 193 326 - -
Tsu03g02827 395 SUPERFAMILY Homeodomain-like 200 294 IPR009057 -
Tsu03g02827 395 MobiDBLite consensus disorder prediction 111 140 - -
Tsu03g02827 395 ProSiteProfiles Myb-like domain profile. 196 247 IPR001005 -
Tsu03g02827 395 SMART sant 200 249 IPR001005 -
Tsu03g02827 395 SMART sant 252 300 IPR001005 -
Tsu03g02827 395 Gene3D - 192 252 - -
Tsu03g02827 395 PANTHER TRANSCRIPTION FACTOR MYB98 193 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02827 Tsu-Chr3 38233809 38238676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02827 201 331 MYB Transcription Factor Family AT5G11050 43.357 4.14e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g02827 Myb_DNA-bind_6 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02827 K09422 - ccaj:109801641 168.703