Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02809 ATGGATATTTGCAACAATGTATCAGTTTCAGGAGAATTTCAACAAGAGTTTTCTACCCTTGATGACCTTTTTGCAACTCACAACAAGgAAGTGGATTTTGGGATGGAGTGGTTATCAGTGTTTGTTGAAGAATGTTTTTCAAGCAAACCAAGTTGTGTCATGGCACCTTCTAGTTCTaatgttcaaattcaaacaactaCATGTACTATCACAAAACCTTCAAACACAATGCAAAAACCTCaacctcaacaacaacaaaaaaaacaaaatcaatcttATTTACAAAATTTTGTTGTTCCCGGAAAAGCAAGAAGCAAAAGGAAAAGACTTTCAACTCCTAGAACCAAAATTTGGTCACATAATTCACACATTTTAAGTGATGCTATGTCTTTAGATCCTCCTTTATTGAAACAATCTTATTGGTTAGCTGATAGTGAACTCATTGCtcctaaaataaaaaacgagCAAAAAGTCGATGTTGCAGTTGCACGCAGAGATACCTCGATTTACCAGAAGAAAAAAAGGGTAAAGCTTGAAATTAAGATTGAAaatagtgatgataaaaataattgtgatgatgatgaacatgTTCCAAATGCAAGAAGGTGCACTCATTGTTTGTCTCAAAGGACCCCACAATGGAGGGCAGGACCATTGGGACCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAATCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGCTACTTGCATTCAAATTCACACAAGAAAGTTTTGGAGATGAGAATGCAATCtattaattag 813 0.3223 MDICNNVSVSGEFQQEFSTLDDLFATHNKEVDFGMEWLSVFVEECFSSKPSCVMAPSSSNVQIQTTTCTITKPSNTMQKPQPQQQQKKQNQSYLQNFVVPGKARSKRKRLSTPRTKIWSHNSHILSDAMSLDPPLLKQSYWLADSELIAPKIKNEQKVDVAVARRDTSIYQKKKRVKLEIKIENSDDKNNCDDDEHVPNARRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMQSIN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02809 270 Pfam GATA zinc finger 203 237 IPR000679 GO:0006355|GO:0043565
Tsu03g02809 270 PANTHER GATA TRANSCRIPTION FACTOR 1 268 - -
Tsu03g02809 270 SMART GATA_3 197 251 IPR000679 GO:0006355|GO:0043565
Tsu03g02809 270 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Tsu03g02809 270 ProSiteProfiles GATA-type zinc finger domain profile. 197 233 IPR000679 GO:0006355|GO:0043565
Tsu03g02809 270 ProSitePatterns GATA-type zinc finger domain. 203 228 IPR000679 GO:0006355|GO:0043565
Tsu03g02809 270 Gene3D - 194 268 IPR013088 GO:0006355|GO:0008270
Tsu03g02809 270 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 260 - -
Tsu03g02809 270 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 268 - -
Tsu03g02809 270 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02809 Tsu-Chr3 37897636 37899887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02809 35 267 C2C2-Gata Transcription Factor Family AT4G32890 41.026 8.83e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu03g02809 GATA 1.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02809 - - gmx:100776805 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02984 07 35490852 35492451 Tsu03g02809 03 37897636 37899887 PCT