Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02807 ATGATTGAATCAAGAAACAAATGTCCATTTTGTGATACACAATTTGGTGTAGAAATGGAAAATCTTAGGGACCATAATAATGATGCTATTGATTTAAGGTCAGCTTGGGTTTTCTCACTTTATGCACCAATTTttcttggtttgatgaatgctTTTAGTCCTTCTCTAGCTACAATTTCTTCACAAGAAAGTAGCACCTCAAGAAATGATGAAAATATTGAACAAGAGAGAGGAAATTTAAATGAACTTGTAAttggaagaaggagaagaactTCAACTTACATGATGCATTTATTTAGAGGACTTCATGTTAGAATGGTTTCTGAAAATGAAAACATAGAACAAAATAGGAACAttgagaataataataataacaataataacaatactaacaataataatagtatatttGTTATTGATCCTTTCAATGAAGGTGCATTAATTGTGAGAGGTCCTAATTTGAATCATACAAATAGGtcaaatgaaaataatagtattagtgCTAATATTAATACTACTATTGGATCTTTGAATGATTTTGTTGATGGAAGTGGATTTGATTTGTTGCTACAACATTTGGCACAAATTAACCCTAGTGGTTATGCTAGTGTTAATCCTCCAACAAAAAAGGAAGCAattgaagaaatggaaaatgtgATTAATGATGAGAAATTGCTATGTACTATATGTTTGGAAGATGTTGAGATTGGAAGTATAGCTAAAGAAATGCCATGTAAGCATAAATTTCATGATGATTGTATTGTATCATGGCTTAAACTACATAGTTCTTGTCCAGTTTGTAGGTTTCAAATGCCTTGTGAGGATTCAAATGTTTTGGCTAATTTTGAAAATGGAAATAGGGAAAATCAGAATAATGAGGTTGTGAGAGGTAGAAATGGAAGGCGAAATTGGTTTCCGGTGCTTCAATCTTTTAATAATTTCCTTCCTTTTCCTTGA 957 0.2748 MIESRNKCPFCDTQFGVEMENLRDHNNDAIDLRSAWVFSLYAPIFLGLMNAFSPSLATISSQESSTSRNDENIEQERGNLNELVIGRRRRTSTYMMHLFRGLHVRMVSENENIEQNRNIENNNNNNNNNTNNNNSIFVIDPFNEGALIVRGPNLNHTNRSNENNSISANINTTIGSLNDFVDGSGFDLLLQHLAQINPSGYASVNPPTKKEAIEEMENVINDEKLLCTICLEDVEIGSIAKEMPCKHKFHDDCIVSWLKLHSSCPVCRFQMPCEDSNVLANFENGNRENQNNEVVRGRNGRRNWFPVLQSFNNFLPFP 318
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02807 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 274 IPR013083 -
Tsu03g02807 318 Pfam Ring finger domain 227 268 IPR001841 -
Tsu03g02807 318 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 317 - -
Tsu03g02807 318 SUPERFAMILY RING/U-box 215 273 - -
Tsu03g02807 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 317 - -
Tsu03g02807 318 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Tsu03g02807 318 SMART ring_2 227 267 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu03g02807 Tsu-Chr3 37849248 37850251 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02807 120 294 C3H Transcription Factor Family AT1G26800 28.977 7.14e-22 89.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02807 K11982 - cam:101512035 444.506