Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02805 ATGTACTTccaccatcaacaacaacaagcaAGGAACATGCATGCTTTAAGGATGCACATGCAAGGAAGTGGAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACAGCAGATCTTCATGAACGTTTCATTGAAGCAGTCAATCAACTTGGAGGATCAGATAAAGCTACACCAAAAACAGTATTGAAACTTATGGGAATTCCTGGACTTACATTATACCATTTAAAAAGTCACCTACAGAAATACAGGATTAGTAAACATGGGAATGGGCATGCTAATAACATTAGCAGCAGTAAAATTGGAGCACCAACCACAGAAGTAGTAGAAAGTAGAATGTCAGAATCAAGTGGAATTCATATGAAAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGAAATAAATGAAGCATTAAATATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAGCTTGAGGTTCAACGACACTTACAATTAAGGATAGAGGCTCAAGGAAAGTACCTTCAATCAGTGCTTGAAAAAGCTAAGGAGACACTAGGAAGTCAAAATTTAGGTACTATGGGAATTGATGCTGCAAAGGTTCAACTATCTGAATTAGCATCAAGAGTATCCACAGAAAACCTTGATACTAAATTTTCAGAACTAAAAGAATTGAATGTACTTTGGCCTCAACAAACACATGAAGGTGAAGCCATTGATTATTCAATGTCAAGTTTCTTAACTAATAGTGAGGATTCACAAAGAGATCAAGAAATACATAACAAGGGCATGAATTTTAGAGCCTATAATGGCACATTTTGTGAAGAAGTGAAGGAGAATACGATGTTTCTTTCCTCATCAAATGATAAAGTACTAGAGgGATCAGGTGAAGTAACCAAACGAACTTCAAGCCTCTTATCAATGAATATAGGAGTTCATGAAGAAGAAAACTTTTGGAGGAGAAATAATTCAAAGGAAGATTTAAAGGGTGAAGaatggaaaagaagaaaaagtattGAAACTAGTGGAGTTCAACTTAAATTGAACAGTGACAAAATTTCTCAAGATTATAGATTGGCTAACTTTGAAGTGAAATTGGACTTGAATTCTCATGATGACAATGATGCTTCTCAATGccaaaaatttgatttgaatgattcagaatgggactctgattggtttgagtatctGAAGAAATATCATCCTGAAGAGGATGTATCTGATGCCCAAGCCCCAGAGGGGTTAGAGGTTTCTCCTGAAGAAGAACAATCTGATTCAGTTGAGTCAGATGCTTCAAAgaaggtgccatccaagctggaaGACTTACCTTCTGAAGATTCCAGATGA 1347 0.3281 MYFHHQQQQARNMHALRMHMQGSGDSGLVLSTDAKPRLKWTADLHERFIEAVNQLGGSDKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKHGNGHANNISSSKIGAPTTEVVESRMSESSGIHMKDLSIGLQTNKNSEINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAKETLGSQNLGTMGIDAAKVQLSELASRVSTENLDTKFSELKELNVLWPQQTHEGEAIDYSMSSFLTNSEDSQRDQEIHNKGMNFRAYNGTFCEEVKENTMFLSSSNDKVLEGSGEVTKRTSSLLSMNIGVHEEENFWRRNNSKEDLKGEEWKRRKSIETSGVQLKLNSDKISQDYRLANFEVKLDLNSHDDNDASQCQKFDLNDSEWDSDWFEYLKKYHPEEDVSDAQAPEGLEVSPEEEQSDSVESDASKKVPSKLEDLPSEDSR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02805 448 Pfam Myb-like DNA-binding domain 37 88 IPR001005 -
Tsu03g02805 448 Gene3D - 34 93 - -
Tsu03g02805 448 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 390 IPR044848 GO:0003700
Tsu03g02805 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Tsu03g02805 448 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 390 - -
Tsu03g02805 448 Pfam MYB-CC type transfactor, LHEQLE motif 139 184 IPR025756 -
Tsu03g02805 448 MobiDBLite consensus disorder prediction 404 448 - -
Tsu03g02805 448 MobiDBLite consensus disorder prediction 426 448 - -
Tsu03g02805 448 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Tsu03g02805 448 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Tsu03g02805 448 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02805 Tsu-Chr3 37771493 37778837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02805 67 390 G2-like Transcription Factor Family AT3G04030 45.217 4.78e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu03g02805 Myb_DNA-binding 6.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02805 - - mtr:MTR_6g032990 664.07