Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02803 ATGGATAACAAAAGTGATGAAGCTCTTGATTTACCTGCTGGTTTCAGATTCCACCCTACTGATGATGAAATCATTActtgttatttaattaataaagttttGAATATAAGCTTTAGTGCAATTGCAATTGGTGAAGCTGATTTGAATAAGTGTGAGCCATGGGATTTAccaaagagaGCTAAGATGGGAGAGAAAGATTGGTATTTCTTTTGTCAAAGAGATAGGAAGTATCCAACAGGAACAAGAACTAATAGAGCAACTGAATCTGGATATTGGAAAGCAACTGGAAAAGATAGAGAGATCTACAAAGGGAAAAGTAACCAACTTATTGGAATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAGAGGAGAGAAAACCAATTGGGTTATGCATGAATTTAGATTGGATGGAAAATTAGCAACTTGTAACCTTCCTAAGGATGCAAAGGATGAATGGGTTGTGTCAAGGATTTTCAACAAGAACATCAACAATGAAGTTAAAAGGACTACTTCAATTTCCAATCTTTTAAGGATAAACTCATTTGGTGatgatttattggatttttctTCACTTCCACCTCTTGTGGAACCTCCTTTTAGCAATAATACTATTATTAATCATCATGACTTCAAAGGAACCAATTCATCACCTTCATCATCAAATGGTTACTATTTTCCAAGCTACTTAATCAACAATGAAGAAATTAATCTCACAAATAATCAGGTTACCAACCAAGGTAATTTCAATAATCCAAtgcaaaaaaacacattttcatCACATCAACCTCAACCTCAAATCCAAATTCCAAAAGCACCATTGAACCAAAATATGTTATCAAATTTATATTCTTATATGAATCAagggaataataataatagcaatGGTTACATTTATGGATTGGAAAATAAAGAGTGCAAGATGGAGCAATTCTCTACCAACAATTCTATGGTGAGTGTTTCACAAGACACATGTTTGAGCAATGACATAAACAATGACATATCTTCTGTGGTCTCAAAGCAAGAAAATATGGGAAGGAATATAACATTGTATGAAGAACTTGAGTGCCCTTCATCAATTGGTCCCCTctcaaattttgaatatttgtgggataactattaa 1128 0.3076 MDNKSDEALDLPAGFRFHPTDDEIITCYLINKVLNISFSAIAIGEADLNKCEPWDLPKRAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDREIYKGKSNQLIGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGKLATCNLPKDAKDEWVVSRIFNKNINNEVKRTTSISNLLRINSFGDDLLDFSSLPPLVEPPFSNNTIINHHDFKGTNSSPSSSNGYYFPSYLINNEEINLTNNQVTNQGNFNNPMQKNTFSSHQPQPQIQIPKAPLNQNMLSNLYSYMNQGNNNNSNGYIYGLENKECKMEQFSTNNSMVSVSQDTCLSNDINNDISSVVSKQENMGRNITLYEELECPSSIGPLSNFEYLWDNY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02803 375 Gene3D NAC domain 20 167 IPR036093 GO:0003677|GO:0006355
Tsu03g02803 375 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 4 327 - -
Tsu03g02803 375 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
Tsu03g02803 375 SUPERFAMILY NAC domain 7 163 IPR036093 GO:0003677|GO:0006355
Tsu03g02803 375 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Tsu03g02803 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02803 Tsu-Chr3 37729170 37730999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02803 1 340 NAC Transcription Factor Family AT5G18270 49.275 6.23e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu03g02803 NAM 1.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02803 - - cam:101514407 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02806 07 33003162 33004934 Tsu03g02803 03 37729170 37730999 PCT