Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02790 ATgaaattgaagaataaaatCATATGCAGGTTACACTCTCTATCTTCCAAAACCCTAAACAAAACACACTTTTTCTACCAATTCAAgaatatcaacaacaacatggTTGATTCTAACCCAATTAACGATGACCCATCAATCATTCAATCGCTCTCAACCGATGCATCTAATGATGCAGAGAATGATGTGAAGTTGAGTTCTAAGGACCAGAGAGATGCTCTTCCAGGTGAGCCGATGTGTATTATATGTGGCTGCTATGGTGAGTATATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGTAAACAATCGGTACTATGTCGAATTTCCAAATCCTCATCTCGTGTTGGAGGTCTTCCGCCATCTAAAAAGCTACCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATGGCAAATCAGGAACGGCGTCTTTAGGAGGTGATCAGATTCAGGCTGAATTGCTTCGAAAGAAACTTGACATTCATGTGAAGGGTGTTGTTTCAGCACCGGTTTTGTCGTTCACTTCATGTAACCTCCCCGACAAACTCATCCACAACATAGAAGCAGCTGGATATGAGATGCCTACGCCTGTCCAAATGCAAGCAATCCCTGCTGCTTCGATGGGGAAGAACATGCTTGTTTTGGCCGATACGGGATCCGGGAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGTTGTGTAAGTCATCGTTTGACTTATGTTTCAGATAAGAAAAAGCCTTTAGCTATGGTGTTAACACCTACGAGAGAGCTCAGTATACAGGTTGAAGAGCACGCAAAATTGCTCGGAAAAGGGTTGCCGTTTAAAACCGCACTCGTGGTTGGTGGCGATGCAATGGCTAGACAACTCTACCGCATTCAGCAAGGAGTCGAATTGATTGTTGGAACACCAGGAAGGCTCGTTGATCTTTTAACGAAGCATGAGATTGACTTAGATGACATAACGACTTTTGTTGTCGATGAGGTGGACTGCATGCTACAAAGGGGTTTCCGAGATCAGGTCTTACAGATATTCACGGCTTTGTCACAACCTCAGGTCTTAATGTTTTCCGCAACAATGTCTGATGATTTAGAGAAAATGGCAAACTCTCTGGCCAAGGATACAGTGGTGATAACTGTTGGTGAACCTAACAGACCAAATAAAGCTGTGAAGCAGCTAGCTATTTGGGTTGAATCGAAACAAAAGAAGCAGAAACTGTTTGACATTTTAACAAGCCAGAAACATTTTAAACCACCTGTTGTAATATACGTCAGCTCGAGACTCGGCGCAGATCTCTTGGCAAATGCAATTACAGTTTCGACAGGAATTAAAGCTATTTCAATTCACGGCGAGAAGTCCATGACCGAAAGGAGAAATATAATGCAGTCATTTATGGTCGGTGAGTTCCCGGTAGTCGTGGCTACGGGAGTTTTGGGTAGAGGGGTTGATCTATTAGGCGTAAGACAAGTGATTGTATTTGACATGCCGAATTCCATTAAGGAATATGTACATCAAATAGGAAGGGCTTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGACGAGAATAGGAATGTTTTCTCAGAGCTAGTTGATGTACTAAAGTCGGGTGCAGCGGCTATACCTCGGGAACTTATTAATTCACAGTATACCACAGGATTTGTCTCTGGTGGCAAAGgtacGACGAAAGCTTATAAAGGGCAAAGCTACGTTGGCCCTGTCCCTGAAGCAAATAAGAGAAAGACTTCTTCCGAGCAGCCAGAGACAAGCACAAAACCTCCTCCTCAACAACCTCCCCAGAATGTGAGCTTGGTGGACCTCGACAGTCGCCATTCCAAGCAGGAACACAAAGAGGAGAAAAAGCTGCGCAAGGAGAAAAAAGAAGGCGACGCGGCGAGCAAGGAGAACCTTCGTCCCATCCCCGATGGAGATTTCGAGCTGATTCCCCTTGGAGAAGATCCGAGCAGGAACTTAAAGATTGGGAAGGACGTCCCCGACTTGGCGAGGAAACTGCTGATGGCCTGCCTGAAAGACAATGTTGATCTGTTCGCTTGGAGTGCTTCCGAGATGCCAAGCTTGGACCCCAACATTGCTTGTCACCAGTTGACCGTCGATGAAGCTGTTAGTGCTGTAGTACAACGTAGGCGTAGGCAGTCTCCTGAAAAAATGGAGGCCGCAGAAAAAGCTTTAAAAGACCTCTTAGAGGAAAATTTTATTTCAGAAGCCAAGTATACAACTTGGTTGTCAGACGTTGTACTcgtgaaaaaatctaatggaaaatggaggatgtgtgttgactataccgatctcaatagggcatgccctaaagatgcttaccctttaccttgcattgatagaTTAGTATATAACtcttctggttttaaattactgtcTTTTTTAGATGCATATTCAGGATACAATCAAATCCCAATGGCTGTCGCCGACAGGACAAAAATGGCACTCATGACCGAGTCGGGCAACTATTACTATAACGTAATGCCCTTCGGCTTGAAAAACGCCGGTGCTACTTATTag 2556 0.4135 MKLKNKIICRLHSLSSKTLNKTHFFYQFKNINNNMVDSNPINDDPSIIQSLSTDASNDAENDVKLSSKDQRDALPGEPMCIICGCYGEYICDETDDDVCSLECKQSVLCRISKSSSRVGGLPPSKKLPAADECFYVRDTDGKSGTASLGGDQIQAELLRKKLDIHVKGVVSAPVLSFTSCNLPDKLIHNIEAAGYEMPTPVQMQAIPAASMGKNMLVLADTGSGKSASFLIPIISRCVSHRLTYVSDKKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDDITTFVVDEVDCMLQRGFRDQVLQIFTALSQPQVLMFSATMSDDLEKMANSLAKDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILTSQKHFKPPVVIYVSSRLGADLLANAITVSTGIKAISIHGEKSMTERRNIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENRNVFSELVDVLKSGAAAIPRELINSQYTTGFVSGGKGTTKAYKGQSYVGPVPEANKRKTSSEQPETSTKPPPQQPPQNVSLVDLDSRHSKQEHKEEKKLRKEKKEGDAASKENLRPIPDGDFELIPLGEDPSRNLKIGKDVPDLARKLLMACLKDNVDLFAWSASEMPSLDPNIACHQLTVDEAVSAVVQRRRRQSPEKMEAAEKALKDLLEENFISEAKYTTWLSDVVLVKKSNGKWRMCVDYTDLNRACPKDAYPLPCIDRLVYNSSGFKLLSFLDAYSGYNQIPMAVADRTKMALMTESGNYYYNVMPFGLKNAGATY 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02790 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 531 IPR027417 -
Tsu03g02790 851 Gene3D - 59 117 - -
Tsu03g02790 851 MobiDBLite consensus disorder prediction 615 648 - -
Tsu03g02790 851 CDD RT_LTR 745 851 - -
Tsu03g02790 851 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 707 846 - -
Tsu03g02790 851 Pfam Helicase conserved C-terminal domain 406 517 IPR001650 -
Tsu03g02790 851 Gene3D - 786 850 IPR043128 -
Tsu03g02790 851 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 175 203 IPR014014 GO:0003724
Tsu03g02790 851 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 382 IPR014001 -
Tsu03g02790 851 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 60 576 - -
Tsu03g02790 851 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 60 576 - -
Tsu03g02790 851 SMART ultradead3 194 397 IPR014001 -
Tsu03g02790 851 Gene3D - 150 383 IPR027417 -
Tsu03g02790 851 SMART helicmild6 435 517 IPR001650 -
Tsu03g02790 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 385 IPR027417 -
Tsu03g02790 851 Gene3D - 384 558 IPR027417 -
Tsu03g02790 851 CDD SF2_C_DEAD 394 526 - -
Tsu03g02790 851 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 556 IPR001650 -
Tsu03g02790 851 Pfam DEAD/DEAH box helicase 199 370 IPR011545 GO:0003676|GO:0005524
Tsu03g02790 851 SUPERFAMILY DNA/RNA polymerases 704 851 IPR043502 -
Tsu03g02790 851 Coils Coil 730 750 - -
Tsu03g02790 851 MobiDBLite consensus disorder prediction 568 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02790 Tsu-Chr3 37509753 37515760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02790 176 537 Eukaryotic Initiation Factors Gene Family AT1G72730 32.698 6.95e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02790 K19466 - gmx:100781473 830.861