Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02786 ATGAAAGAGAAGAGagttagtaatatttatatgTTGGATGAATTGGAATCCAGATTATCCTCATCTTCTGATGCTGAAGTTAAAACACGTCGATTTAGTATTGATAAATTAAGCCATGATGGTGTGCATGGAAGCAGTCAAACCTCTTCAAGGTCTTTCAAAAGAGGAATAAGAAAAGGATCTGAAGGACTCAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCTGTGTTCCCAGAAGATCTTCAAGTTTCAGAAAACAAGATATTTGATCCTCAAGACAATTTTTTGCTCTTTTGGAATAAGCTTTTTGTTATCTCGTGCATTTTGGCCGTGTCTGTGGATCCGCTGTTTTTTTATCTCCCTGTCATCAATGATTCATTACGATGTCTTGATCCAGCACAGATAGCAAAGAGATACTTACGGCGATATTTCATCATTGATTTCTTATCAGTGTTGCCCTTACCACAGATTGTGGTGTGGAGATTTcttcagagttcaaaaggttCAGATGTAGTCACAACAAAGCAGGCCTTACTTTTCATTATTTTGCTTCAGTACATTCCAAGATTTCTCCGTATGGTACCATTGACTTCTGAGCTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCTGCATATTATTTGCTATTGTTCATGCTTGCCAGccatATAGTTGGGTCGTTTTGGTACTTGTTAGCTGTTGAACGTAATGACTTTTGCTGGAAGAAGGCTTGTAGCGACAATGGGTACAACAAGAAATTCTTGTATTGTGGCAACCAATACATGCAAGGTTATAGTTCCTGGCAGAATAAAAGTGAAGCTATTCTTACATCACAGTGCTCTACAGATAATGATAATCCTCCTTTTGACTATGGGATATTCACACAAGCCTTGAAATCTGGCATTGTTTCGTCTAACAAGTTCTTGTCCAAGTACTGTTACTGTTTATGGTGGGGGCTTCAGAATTTGagTACACTTGGCCAGGGGCTTCAAACTAGTACTTACACTGGGGAGGTTATCTTTTCAATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTTCCATTAGGCTTGAGGAAATGAGAGTCAAGAGACGTGATTCAGAACAGTGGATGCATCATCGTCTGCTCCCAAAAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAATGTTTGGTACAGAGTCTCCCAAAGGACCTTCAAAGAGACATTAAGCGTCACCTTTGTCTGGCATTAGTTAGAAGGGTTCCTTTATTTGAGAGTATGGATGAGAGATTGCTTGATGCTATATGCGAGAGACTGAAGCCATGTTTATTTACAGAGAATACTTACATTGTTAGGGAGGGAGATCCGGTTGATGAGATGCTTTTCATCATACGTGGTCGTCTCGAGAGTGTTACTACAGATGGTGGAAGGAGTGGTTTTTTTAATCGCAGTTATCTAAAAGAGGCAGACTTCTGCGGGGAGGAGCTTTTAACCTGGGCGCTTGATCCCAAGTCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTTAAGGCTTTAATGGAGGTTGAGGCTTTTGCGTTAACTGCTGAAGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAGCACACCTTCCGCTTTTACTCCCAACAATGGAGGACATGGGCTGCATGCTTTATTCAAGCAGCATGGCGTAGGTATTGCAAACGAAAAATTATGGAGCTTCGTCGAAAGGAAGAACCTGAGGACTCAGAAGGAACTCCCAGCAATGTTGGTGGCAGTTCATACAGTCTTGGTGCAACATTATTGGCTTCCAAATTTGCTGCAAATGCTCTTCGTGGTGTACATCGCAATCGGATTGTGAAGAGTTCCAGGGACTTGGTCAAACTACAGAAACCTTCTGAGCCCGACTTCACTGCTGATGATATGTAA 2031 0.4116 MKEKRVSNIYMLDELESRLSSSSDAEVKTRRFSIDKLSHDGVHGSSQTSSRSFKRGIRKGSEGLKSIGRSLGFGVSKAVFPEDLQVSENKIFDPQDNFLLFWNKLFVISCILAVSVDPLFFYLPVINDSLRCLDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQSSKGSDVVTTKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWKKACSDNGYNKKFLYCGNQYMQGYSSWQNKSEAILTSQCSTDNDNPPFDYGIFTQALKSGIVSSNKFLSKYCYCLWWGLQNLSTLGQGLQTSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLSIRLEEMRVKRRDSEQWMHHRLLPKELRERVRRYDQYKWLATRGVDEECLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSYLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKRKIMELRRKEEPEDSEGTPSNVGGSSYSLGATLLASKFAANALRGVHRNRIVKSSRDLVKLQKPSEPDFTADDM 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02786 676 Gene3D Jelly Rolls 448 568 IPR014710 -
Tsu03g02786 676 Pfam Ion transport protein 90 375 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu03g02786 676 Gene3D Helix hairpin bin 377 441 - -
Tsu03g02786 676 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 133 673 - -
Tsu03g02786 676 SMART cnmp_10 450 581 IPR000595 -
Tsu03g02786 676 Gene3D - 81 375 - -
Tsu03g02786 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 133 673 - -
Tsu03g02786 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 134 - -
Tsu03g02786 676 CDD CAP_ED 450 581 IPR000595 -
Tsu03g02786 676 ProSiteProfiles IQ motif profile. 586 615 IPR000048 GO:0005515
Tsu03g02786 676 Pfam Cyclic nucleotide-binding domain 471 560 IPR000595 -
Tsu03g02786 676 ProSiteProfiles cAMP/cGMP binding motif profile. 450 534 IPR000595 -
Tsu03g02786 676 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 8 134 - -
Tsu03g02786 676 SUPERFAMILY Voltage-gated potassium channels 93 372 - -
Tsu03g02786 676 SUPERFAMILY cAMP-binding domain-like 379 570 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02786 Tsu-Chr3 37479075 37485791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02786 42 674 Ion Channels AT5G57940 74.708 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02786 K05391 - gmx:100820202 1147.11