Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02785 ATGGACTTCAAAAATGGCACCAAACTTGTCAGGTTCAAATCAGATGGCAGCAAAATCCATAAAGATTCTCAACGACTATGGGGAGAAACTGAACCATCAAaagtttcatcatcatcttcatcttcaatgCTTAAACCTAATAGTAACAATGTTATACCATTAGGTAAAAACAGAATATCACGATCTAAGGTATTTCCAGAAGATCATGAACCATGGAGAAAAAGAATACTTGATCCTGGTAGCGAGATTGTATTGAAATGGAATCGAATTTTTATAGTTTCTTGTTTGGTAGCACTTTTTGTTGATCCTTTATACTTTTATTTACCTAGTGTGTTGGTACAAGAAAATACAGAGTCTTCTTGTGTTAGGACTGATTTTACATTAAGGATTGTTGTCACGTTTCTTCGAACTATTGCCGATGTTTTTTATCTGTTACACTTGATTATTAAGTTCAGGACTGCTTATGTTGCACCTAGTTCGCGTGTATTTGGAAGAGGTGAACTTGTTATGGACCCGAGTAAAATTGCAAGGCGATATATTAGATCTGATTTCTTTATTGATTTGATTGCCACATTACCATTACCACAGatgGTCATTTGGTTTATCATACCGGCTACAAGGAGTCCTCAGACTGATCACAAGAATAATGCTCTTGCATTGATTGTCTTGCTCCAATATGTTCCAagattatatttaatttttccatTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACTGCTTGGGCAGGAGCTGCATATAATTTGCTATTGTACATGTTGGCTAGCCATGTTTTAGGAGCATCTTGGTATCTTCTGTCTGTTGACCGATATACTACTTGTTGGAAATCCATGTGCAAAAAGGAAAGTAACCCTGACAATTGCTTTCTCTACCTAGACTGCAGTTCTTTGAATAATGATATGCGCAAGATATGGGAAAATAGTACAGATGTGTTTAAAAGTTGTGACCCCAATAATGATGACATTCCGTTCAAGTATGGGTTATTTGAAAATGCATTAACAAAAAATGTTGTCTCTTCAAGCTTCATACCAAAATACTTATATTGTTTATGGTGGGGGTTGCAGCAACTAAGTTCTTACGGACAGAACCTAGATACGACCACATTTATTGGAGAAACGTCATTTGCTATTGTGATTGCCATCTTGGGTCTTGTATTATTTGCTCATTTGATCGGGAACATGCAGACATATTTACAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTAAAGCGAAGAGACACAGAGGAGTGGATGGGACATCGGCAACTCCCTGAAGATTTGAGATTTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCAACTCGTGGTGTTGATGAAGAAACCATTCTACGTTCATTGCCAACTGATCTTCGTCGTGATATCCAACGCCACCTATGCTTAGACCTTGTTAGACGAGTTCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCGATATGTGAGCGGCTGGTATCTTCTCTAAGCACGCTAGGCACCTACATTGTTCGTGAGGGTGACCCTGTAACTGAAATGCTGTTTATCATTAGAGGCAGACTAGACAGTTCTACGACAAATGGTGGCCGGACTGGTTTTTTCAACTCAATCATATTGAGACCTGGAGATTTTTGCGGTGAGGAACTTCTTTCTTGGGCACTACTCCCAAAATCAACCATGAATTTGCCGTCTTCAACTAGGACAGTTAAAGCCCTAAGCGAGGTTGAAGCTTTTGCTCTTCGAGCTGAAGATCTAAAGTTCGTTGCTAATCAATTTAGGCGCCTTCACAGCAAAAAGCTGCAGCACACCTTTCGATTTTACTCTCATCATTGGAGGACTTGGGCCGCTTGTTTTATACAGGCTGCTTGGCGTCGATATAAGAAAAGGATGTCTGCCAAAAATCTTGGTTTGAGGGAATCCCTTCCTTTAGATGAGACAGTGGCCAGTGAGAGATTACAAGACGAAGAATATCCTATTGGTTCAAACTCATCACAGGCTAAATTGAACCTCGGAGTCACAATTCTTGCTTCAAGGTTTGCTGCTAACACACGAAGAGGAGCTCTAAAGATGAAAGACGAACTGCCTAAGCTTCGAAAGCCAGAAGAGCCGGACTTCTCCACTGAAGCAGATGATGATTAG 2172 0.3904 MDFKNGTKLVRFKSDGSKIHKDSQRLWGETEPSKVSSSSSSSMLKPNSNNVIPLGKNRISRSKVFPEDHEPWRKRILDPGSEIVLKWNRIFIVSCLVALFVDPLYFYLPSVLVQENTESSCVRTDFTLRIVVTFLRTIADVFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPSKIARRYIRSDFFIDLIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSMCKKESNPDNCFLYLDCSSLNNDMRKIWENSTDVFKSCDPNNDDIPFKYGLFENALTKNVVSSSFIPKYLYCLWWGLQQLSSYGQNLDTTTFIGETSFAIVIAILGLVLFAHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMGHRQLPEDLRFRVRRFVQYKWLATRGVDEETILRSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTMNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSAKNLGLRESLPLDETVASERLQDEEYPIGSNSSQAKLNLGVTILASRFAANTRRGALKMKDELPKLRKPEEPDFSTEADDD 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02785 723 Gene3D Jelly Rolls 485 605 IPR014710 -
Tsu03g02785 723 PRINTS EAG/ELK/ERG potassium channel family signature 264 274 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu03g02785 723 PRINTS EAG/ELK/ERG potassium channel family signature 382 393 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu03g02785 723 PRINTS EAG/ELK/ERG potassium channel family signature 147 156 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu03g02785 723 PRINTS EAG/ELK/ERG potassium channel family signature 400 409 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu03g02785 723 PRINTS EAG/ELK/ERG potassium channel family signature 450 457 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu03g02785 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 50 720 - -
Tsu03g02785 723 Pfam Ion transport protein 87 413 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu03g02785 723 SUPERFAMILY cAMP-binding domain-like 417 609 IPR018490 -
Tsu03g02785 723 SMART cnmp_10 487 618 IPR000595 -
Tsu03g02785 723 Pfam Cyclic nucleotide-binding domain 511 598 IPR000595 -
Tsu03g02785 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 50 720 - -
Tsu03g02785 723 CDD CAP_ED 487 618 IPR000595 -
Tsu03g02785 723 Gene3D - 90 412 - -
Tsu03g02785 723 MobiDBLite consensus disorder prediction 29 47 - -
Tsu03g02785 723 MobiDBLite consensus disorder prediction 702 716 - -
Tsu03g02785 723 MobiDBLite consensus disorder prediction 14 47 - -
Tsu03g02785 723 SUPERFAMILY Voltage-gated potassium channels 81 409 - -
Tsu03g02785 723 MobiDBLite consensus disorder prediction 702 723 - -
Tsu03g02785 723 MobiDBLite consensus disorder prediction 14 28 - -
Tsu03g02785 723 Gene3D Helix hairpin bin 415 478 - -
Tsu03g02785 723 ProSiteProfiles cAMP/cGMP binding motif profile. 487 617 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02785 Tsu-Chr3 37464303 37471265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02785 8 722 Ion Channels AT4G30360 70.954 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02785 K05391 - gmx:100808425 1239.94