Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02784 atgttgataACTGTAAGAGAaacttcctcttcttctttgtGGCTTAATCGTCTCCGTCACAtaccatcttcttcttcttcttgcagACCCACCCTCTCTCTCCGTGTCCGTAGTAGTAGTAGCAGTAGAACTTCCAATTTCTCTACTCTCTCTACCAGCAGTGACCTAGCGAATTTCGATCCCTTGGGTATTAACCCAGATTTATCTTCTACTTTGAGTTCTACTTGGAAAAATCTGGTGAGTTTGTTTCCACAAGTATTTGAGAGCTCTTCAAatacagaaaaggaaaaacccCGAGGAGTAGCAGCTGCTATCGAGGATAGTTCAATTGATTTTGGTGACTTCTTCAAAGGACCACTGCCAGGGAAGTTTCTTCAGCTTTTAGGGTTTCTTGCATTGTCAAGGCTTGGTGTGTATATACCTCTAGGTGGAGTTAATAGGGAGGCTTTTCTTGGAAATTTGGATCAGAACAGTTTATTAAGCACTCTCGACTCCTTTTCTGGTGGAGGTATTGGTAGACTTGGACTATGCTCTCTTGGTATTGTTCCCTTCATCAATGCACAGATTGTGTTTCAGCTTCTTGCTCAAGTATATCCCAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAATTCTTCAATACACTCGATATGCTTCGGTTGGATTTGCCATTGTACAGGCGATTGGTCAAGTTCTTTTCCTGCGGCCATATGTAAATGACTTTTCAACAGAGTGGGCTCTTACTTCTGTTATCTTGTTGACACTTGGCGCTGTGTTTACAACGTACATTGGGGAACAAATTACTGAACTGAAACTTGGGAATGGTACCTCTCTTTTGATATTCACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTCGAACATTTGCCCAAGCATTTAATGATGCTAACTATGCTGGACTTGTTACCATCGTTGTGTCCTTCTTTCTGTTGGTACTTGGAATTGTCTATGTTCAGGAAGCCGAGAGAAAAATTCCTATTAACTATGCTTCTAGATTCACCAGCAGAAGTGGAGGACTTGAAAAATCTGCTTACCTACCGTTTAAGGTAAATAGTTCTGGGGTAATGCCTATCATATTTTCTACATCGTCATTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTATAAGTGCGCTAAAAAATGCTGCTGTGGCATTGAATCCAGGAGGCTCCTTCTATCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTTGATCCTGATGATGTGAGCGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAAAAGTACAGCTACATTTATTAAAACGGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCAATTTTGGCTGCTGGACCTGCAGTTGTTGAGCAGACGGCCCACTTGACTGCATTCCGGGGATTTGCAGGAACATCTATTCTTATTCTTGTTGGTTGCGCAACAGATACAGCAAGAAAAGTTCGAGCTGAGATTATATCCCAGAAGTACAAAAACATAGAGTTATATGACTTCGAGAAGTATTGA 1596 0.3941 MLITVRETSSSSLWLNRLRHIPSSSSSCRPTLSLRVRSSSSSRTSNFSTLSTSSDLANFDPLGINPDLSSTLSSTWKNLVSLFPQVFESSSNTEKEKPRGVAAAIEDSSIDFGDFFKGPLPGKFLQLLGFLALSRLGVYIPLGGVNREAFLGNLDQNSLLSTLDSFSGGGIGRLGLCSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWALTSVILLTLGAVFTTYIGEQITELKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYAGLVTIVVSFFLLVLGIVYVQEAERKIPINYASRFTSRSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGISALKNAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQTAHLTAFRGFAGTSILILVGCATDTARKVRAEIISQKYKNIELYDFEKY 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02784 531 Pfam SecY 176 507 IPR002208 GO:0015031|GO:0016020
Tsu03g02784 531 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 45 529 - -
Tsu03g02784 531 ProSitePatterns Protein secY signature 1. 175 194 IPR030659 -
Tsu03g02784 531 SUPERFAMILY Preprotein translocase SecY subunit 116 514 IPR023201 -
Tsu03g02784 531 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 45 529 IPR002208 GO:0015031|GO:0016020
Tsu03g02784 531 ProSitePatterns Protein secY signature 2. 267 284 IPR030659 -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 124 142 - -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 174 194 - -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 216 239 - -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 248 273 - -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 274 297 - -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 365 384 - -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 404 426 - -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 459 477 - -
Tsu03g02784 531 PRINTS Preprotein translocase SecY subunit signature 493 511 - -
Tsu03g02784 531 Hamap Protein translocase subunit SecY [secY]. 112 524 IPR026593 -
Tsu03g02784 531 Gene3D SecY subunit domain 115 520 IPR023201 -
Tsu03g02784 531 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 123 520 IPR002208 GO:0015031|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02784 37 531 Chloroplast and Mitochondria Gene Families AT2G18710 82.200 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02784 K10956 - gmx:100810430 867.07