Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02779 ATGGCAAAACTATCAAAACAACAAACTCAGAAAAACAATAATGCAAATAGCACTGTGAATACCAAAGTgaaaagaacaagaagaagTGTCCCTAGAGATTCCCCAATTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACAGATGGACGGGTCGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCGCAAAACAAGAAAGGACGACAAGGGGCTTATGATGATGAAGAGGCTGCAGCACATGCTTATGATCTAGCTGCATTGAAATATTGGGGTCCAGATACCATTCTTAACTTTCAGTTATGTACCTACCAGAATCAATTGAGAGAAATGGAGGATCAGTCAAGGGAGGAGTATATTGGATCGTTAAGGAGGAAAAGTAGCGGTTTTTCTCGAGGAGTTTCTAAATACCGGGGCGTAGCGAgACACCATCATAATGGAAGGTGGGAGGCTCGTATTGGCAGGGTATTTGGCAACAAATATCTTTATCTTGGGACATATGCTACACAGGAAGAAGCTGCCACCGCATATGATATGGCAGCTATTGAATATCGTGGACTCAATGCTGTTACTAATTTTGACCTTAGCCGTTATATTAAGTGGCTTAAACCTAATCATCATAACAATAACACAGAAAATAACACCAAACTTATTAATAATTCTAACCCAACAATATGTGACACTAATCAAGAAGAACAAGGACTTAACTTGTTTCACACTCAAAATGAGTCAtttgaaagagaagaaaaagaaaaagaagcaataacatcaataacacaaTCTCGGCAAGGTGGCGGCGCCACATCGGCATTAGGTCTTTTGCTTCAATCATCAAAGTTTAAGGAAATGATGGCTGCTGCTGATGATTTGTCCACAACACCACAAAAGTCATACACATTTCCTGATGACATTCAAACATACTTTGAATCTAGTGATGATCATATTCAtaattcttgttcttcatctacTAAATATGGAGAAGAGGATATTGATTTGTTCAATGGCTTCAATTCTTTTGTGCCTTCTATTTTCCTCCATTCTCATGACTTTGATCTAGGCTTCAAGGTCTAG 1083 0.3638 MAKLSKQQTQKNNNANSTVNTKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGPDTILNFQLCTYQNQLREMEDQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHHNNNTENNTKLINNSNPTICDTNQEEQGLNLFHTQNESFEREEKEKEAITSITQSRQGGGATSALGLLLQSSKFKEMMAAADDLSTTPQKSYTFPDDIQTYFESSDDHIHNSCSSSTKYGEEDIDLFNGFNSFVPSIFLHSHDFDLGFKV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02779 360 CDD AP2 139 200 IPR001471 GO:0003700|GO:0006355
Tsu03g02779 360 Pfam AP2 domain 41 96 IPR001471 GO:0003700|GO:0006355
Tsu03g02779 360 Pfam AP2 domain 139 190 IPR001471 GO:0003700|GO:0006355
Tsu03g02779 360 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Tsu03g02779 360 PRINTS Ethylene responsive element binding protein signature 180 200 IPR001471 GO:0003700|GO:0006355
Tsu03g02779 360 Gene3D AP2/ERF domain 139 200 IPR036955 GO:0003700|GO:0006355
Tsu03g02779 360 Gene3D AP2/ERF domain 41 106 IPR036955 GO:0003700|GO:0006355
Tsu03g02779 360 SUPERFAMILY DNA-binding domain 40 105 IPR016177 GO:0003677
Tsu03g02779 360 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 321 - -
Tsu03g02779 360 MobiDBLite consensus disorder prediction 1 24 - -
Tsu03g02779 360 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Tsu03g02779 360 SUPERFAMILY DNA-binding domain 139 200 IPR016177 GO:0003677
Tsu03g02779 360 SMART rav1_2 41 110 IPR001471 GO:0003700|GO:0006355
Tsu03g02779 360 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Tsu03g02779 360 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 321 - -
Tsu03g02779 360 MobiDBLite consensus disorder prediction 1 34 - -
Tsu03g02779 360 ProSiteProfiles AP2/ERF domain profile. 41 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02779 Tsu-Chr3 37256792 37261019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02779 37 202 AP2-EREBP Transcription Factor Family AT5G57390 70.414 7.05e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu03g02779 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02779 K09285 - gmx:100804555 449.129