Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02778 ATGATGGTGATGGATTCTGGTGATGATTCTGGGTTTGTTTTCGTCTTTTTTGGATTTCTGGCTTGTCGGTGCTCTGAAAATTGTAATAATCGGCCATTTCGCAAGGAGAAAAAGATCAGAGTTGTCAAGACTTTGTTTTGTGGATGGGGAGTTGAGGCTTCTGAAACAATTGAGAAAGGAGATTTCATAATTGAGTATGTTGGAGAAGTCATTGATGATGCTGCATGTGAACAAAGGCTTTGGGACATGAAATATAAGGGCTTAGAGAATTTTTATATGTGTGAGATTCGCAAAGACTTCACAATAGATGCAActttcaaaggaaattcttcACGCTTTTTAAACCATAGCTGTGATCCCAATTGTATTTTGGAGAAGTGGCAAGTAGATGGTGAAACGCGTGTTGGTGTATTTGCTGCCCGTTCAATAGAAGTTGGAGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAGTGCCGGTGCGGAGCACAGAAATGTCAAGGATTTCTAggttcaaaaaagaaaattagcaAAGTAGTAAAACTCTGTTGTTGGGGTGCAAAACATTTTGCCAAGTTCTTTGAAAGGTGGTGTTATTAA 615 0.3707 MMVMDSGDDSGFVFVFFGFLACRCSENCNNRPFRKEKKIRVVKTLFCGWGVEASETIEKGDFIIEYVGEVIDDAACEQRLWDMKYKGLENFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCILEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCRCGAQKCQGFLGSKKKISKVVKLCCWGAKHFAKFFERWCY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02778 204 ProSiteProfiles Post-SET domain profile. 160 176 IPR003616 -
Tsu03g02778 204 Gene3D SET domain 15 186 IPR046341 -
Tsu03g02778 204 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 21 202 IPR025787 -
Tsu03g02778 204 Pfam SET domain 48 153 IPR001214 GO:0005515
Tsu03g02778 204 ProSiteProfiles SET domain profile. 37 154 IPR001214 GO:0005515
Tsu03g02778 204 PANTHER SET DOMAIN PROTEINS 21 194 - -
Tsu03g02778 204 SMART set_7 37 160 IPR001214 GO:0005515
Tsu03g02778 204 SUPERFAMILY SET domain 21 173 IPR046341 -
Tsu03g02778 204 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 21 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02778 Tsu-Chr3 37145168 37153866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02778 22 176 C2H2 Transcription Factor Family AT2G23740 34.091 2.49e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu03g02778 SET 7.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02778 - - aprc:113859744 327.02