Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02745 ATGGCTCGAAAAAACTCAACCAAGCTCTCCATCCATTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAATTTACAAGGAGATATGGAGTGAATCTATCAAATCCAGTGTTGATTAATCCTCCTGACGGCACTAAATGGAAAGTTTATTGGAAAAATATCAATGGTGAGATTTGGTTTGAGAAGGGTTGGAaaatttttactctaaattACTCTCTACAACGAGGTTGTTTGgtattatttaaatatagaaaagGAACTTCCAACTTCAATGTAGTCATATTTGGCCAGAATGCATTAGAAATAGATTATGGTTCTTCATGTGACACttatggtgatgatgatgatgataatgatgaaaaTGACAATATTGATCATAGTGATGATGAATCAGTTGAGATTCTGGATGAAAAGGACAATGTTGATTATAGTGATGATGAATCAGTTAAGATTTTGGATGAATTAAGTGAGACTAAAAGAACCTCATCACTGAATATGCCAAAGGAAGCTAGAGCTCAGGAAATTGCTGAAAATTTCATCTCAAGAAATccttttttcacaatttttataaGCCCTTATCATGTGGCCAAAAGTCATCAGCTGGATGTACCAAGTTTAAAAGGGATTATTGAGAAGAAAGACAAGTATGTGATGCTGCAGATTGGAAAAAAATCATGGAATGTGAAACTGCTTCGTTGTTATGAGGATAAAAATAGCCGTCGCCTTTCGGCTGGTTGGCGCTTGTTTGTAAGTGAAAGTGGATTGAAACCAGGAGATGTTTGTGTCTTTGAATTGATAAACAAGAACGATTTAGTTTTTAAAGTTCATGTTTTCTAA 855 0.3193 MARKNSTKLSIHFFKIILQTNLQRLKIPNKFTRRYGVNLSNPVLINPPDGTKWKVYWKNINGEIWFEKGWKIFTLNYSLQRGCLVLFKYRKGTSNFNVVIFGQNALEIDYGSSCDTYGDDDDDNDENDNIDHSDDESVEILDEKDNVDYSDDESVKILDELSETKRTSSLNMPKEARAQEIAENFISRNPFFTIFISPYHVAKSHQLDVPSLKGIIEKKDKYVMLQIGKKSWNVKLLRCYEDKNSRRLSAGWRLFVSESGLKPGDVCVFELINKNDLVFKVHVF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02745 284 Gene3D - 5 105 IPR015300 -
Tsu03g02745 284 PANTHER B3 DOMAIN-CONTAINING 5 284 - -
Tsu03g02745 284 CDD B3_DNA 190 284 IPR003340 GO:0003677
Tsu03g02745 284 ProSiteProfiles B3 DNA-binding domain profile. 192 284 IPR003340 GO:0003677
Tsu03g02745 284 Gene3D - 171 284 IPR015300 -
Tsu03g02745 284 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 284 - -
Tsu03g02745 284 ProSiteProfiles B3 DNA-binding domain profile. 10 104 IPR003340 GO:0003677
Tsu03g02745 284 SMART B3_2 13 104 IPR003340 GO:0003677
Tsu03g02745 284 SMART B3_2 191 282 IPR003340 GO:0003677
Tsu03g02745 284 CDD B3_DNA 12 101 IPR003340 GO:0003677
Tsu03g02745 284 SUPERFAMILY DNA-binding pseudobarrel domain 12 111 IPR015300 -
Tsu03g02745 284 SUPERFAMILY DNA-binding pseudobarrel domain 187 284 IPR015300 -
Tsu03g02745 284 Pfam B3 DNA binding domain 20 102 IPR003340 GO:0003677
Tsu03g02745 284 Pfam B3 DNA binding domain 198 284 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02745 Tsu-Chr3 36542887 36548422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02745 13 123 B3 DNA Binding Superfamily AT4G01580 36.283 1.40e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu03g02745 B3 1.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02745 - - mtr:MTR_3g061330 295.434