Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02744 ATGACAAAATGTCAATTGCCTCCCCCGGCCGCATGCAGACATTGCAATGCAAGGCTATTTTACACTGAATCACGTGGCATGTGTTGTAATGGCGGAAAAGTGTCATTTTCAATAGTTAATGCTCCTCCAGAATTGCGACAACTATTTTTAGATCCCTCTGCTGAAGGAATTCATTTTAGGCAAAATATTAGAAGTTACAACCATGTACTTTCATTCACTTCAATTGGTGTACATGTCGACGAAAGTATACTTGCAACTGGTCGTGGTATATACACATTTCGTGCTCAGGGTTCTTTTTATCACAACATAGGAGGTTTTTTTCCAAATGAAGGTAGCAGACCGAGATACTTGCAGTTATATATCTACGATACAGAACACGAGCTACAAAATAGGATGCTAGAAAATCCTCAACTACATCAGTCTGTAGTTTATCAACTACAACAGATGCTCCATCGATGTAATCCTTATGTTGAAAAGTTCAAACAACTTGCACAACTTCCAAATGTTGGTCggaattttttatcaaattttcaaGGAAATCATGACAGTGAAGAGGGATCAAGCAGAACAAATGTTAATAACATTGTACATGATGTGGAGGTCACCGCTAATGTAACATCAGCACGTGGTCGTCGTCAAGAAGAGTACGATAGTGTTGTCAGGGCTGAAATACCTAAATTAGAATGTGAACCACATTTACATGTTGCAGTACTAAAACATATGATCCATGGACCTTGCGGTGTACTCAACGAAAGTTCTCCATGCATGAAGGATGGACATTGTAAAAAAAGGTATCCAAAAGAGTTCTTAGATGAAACCCGCCGTGGCAATGACTCTTATCCACAATATAGAAGAAGGTTTCACGAACCTATCTCTATAAATAGAAATAAGTCTGTAGATAATAGATGGGTGGTTCCTTATAATCCTTGGTTATTGTTAAAGTACGATTGCCACATAAATGTTGAAGTTTGTAGTAGCATTAAAAGCATTAAATATCTTTATAAGTATGTCTACAAAGGCCCTGATCGAGTGGCAATGGAGGTTCATGGAGGATCAACTTTGGATGAGGTTCAACAATATGTGGATGCAAGATGGATTTGTGCTCCTGAGGCATTATGGAAAATATTTCGATTCACCATGTACCGATTATATCCCTCTGTTGAAAGACTACAAATTCACTTACCTAATCGTCACCAAGTGCGATATTATGATCACCAAAGAATTGTGGATGTGCTTAATGATGAGCGTAACTCCAAAACAATGCTCACACAATTCTTTGCACTAAATCGAAGAGATCCACACTCAAGAAATTATTTGTATAGAGAGATTCCAGAGCATTACTGGTGGaacaataaagataaggaaTGGAACCGAAGACTTTCATTAAGAAAGGTTATTGGGAGAATCTATACTGTATCGCCTTCAGAAGGAGAAAAGTTTTACTTGCGAGTATTGTTATCTCATGTAAAAGGTCCGACCAGTTGGGAAGATCTTCTTACAAATAATGGCACTCCCTTCAATACATTCAAAAAAGCTGCTGAGGATCGGGGATATCTAGAGATGGATAGTAGTATTCGAGATTGCTTGGTTAATGCATCATGTGTTCGACTGCCATATGCTATAAGGAGGTTGTTTGCaactatattaatattttgtgaaCCTACTGATGTTAGATCCCTTTGGAATGAGTTTTTCACCCACATGACAGAAGATTATCAAACTAATAACAATGCCGTGGAGTTAAACTTAACTCATATGTTGTTGAAAGATTTGAATCAGCTGTTAGAAATACACGGTAAAAGCACCAAAGATTATGATCTTCCATCTTTACCTGCAGGTGCAacagaagaaaatgaaataccAAGTGTTATACAAGAAGAATTATCAGTACGCATTCCCGATGAAGACATGCAGGCTGTTGCAAAATTAAATAACGACCAAATGAATGCTTTCAAAATCATTATGGATGTCATCGAACGCAAAAAAAGCCaagtattttttattgatgGTCCAGGTGGAACAGGTGGAACAGGTAAAACATTCCTTTATCGAACATTAATGGCAACTTTGAGAAGTCAAGGACAAATTGTCATAGCGACCGCGTCTTCTGGTATAGCTGCAACATTATTACCTGGTGGTCGAACCGCACACTCCAGATTTAAGCTGCCATTTGATGCAATACCAGCATTTCTTATGCGTATTGGTGATGGAGTTGAACCTACTAAACCTGATGATATGGTGAAGATACCTTCCCGGATTGCAATACCGTGGGAAGGAGAGCATTCTATACAAATTTTTATCGACCATATCTTCCCCCAATTAGAATTGCATGGTTGGGATGCATCATATATGACACAAAGAGCTATACTTACACCTAAAAATGATGACGTCCAAAAGTTGAATGATATACTTATCAACCAGTTTCCAGGAGAAGAACATAATTTGTTGTCATTCGACGAGGTTGAAGGGGACACCCACAACTTATATCAGCAGGAATTGTTAAACTCCATTACCCAAGGTGGTTTACCTCcgcatattttaaaattaaaaaaaggtgCACCACTTATGTTGTTGCGGAATCTTGATCCTAGATATGGCCTGTGTAACGGAACACGGTTATTATGTCGTGGTTTGTTTATGAACATGTTGGATGTTGAGATCCTAACAGGAAGCAACGCTGGAAAAAGAGCTTTTTTGCCAAGAATTAAACTAAAAACATCAGCAAATTCAGGTCTTCCCTTTGTGCTTAGCAGAAAACAGTTTCCTGTGAGACTAAGTTTTGCTATAACTATAAATAAGTCACAAGGACAAACCATTCCAAATGTCGGAATCTATCTTCCGCGTCATGTTTTCAGTCATGGGCAGTTATATGTGGCTTTATCTAGAGGTGTTTCACAAAATTCAACAAAGGTACTCATCAGAGATGGAAAACTACAAGCAACACGAAGAAGACGAGTTAAAAAAAGGGTTTGCACCATTCCTCGTGCTCCTGATGGAAGTGCCTTTTTTAACTGTGGAACATGTGGAGTGTCTGTTGCTATTTCCTTGGCTGATATGCACTTTTGTCAATCCAACAAGATGGAATTCAAAAGGTTCTTTGGAATTGTTCTCAACCCAACATTCCCCCAAAACAAACAACAGCTCATCGAGAATCAACCCGTTTCGCCTTACCGTCTTTTTATGGAAAGCTTCATGAAGGATCAAGACATGGaaatttataatattgaaattgaTAGGATAGGGtttgaaaaatggaaaaatatgtCTGAGGAGgAGAAGCAACCATTTGTTTCTCGCGCTAGAGAACTGGACAATAAACACCAGGAAGCTTTGAAAGAGGAGGCTGATGACATCATAAAGGTAAGGTATGGAGCTGATTCACCAATGATTGATGAGATGCAATGGATCTTTGGAGAATCTGTGGAGTTCTCAAAAGAATAA 3441 0.3734 MTKCQLPPPAACRHCNARLFYTESRGMCCNGGKVSFSIVNAPPELRQLFLDPSAEGIHFRQNIRSYNHVLSFTSIGVHVDESILATGRGIYTFRAQGSFYHNIGGFFPNEGSRPRYLQLYIYDTEHELQNRMLENPQLHQSVVYQLQQMLHRCNPYVEKFKQLAQLPNVGRNFLSNFQGNHDSEEGSSRTNVNNIVHDVEVTANVTSARGRRQEEYDSVVRAEIPKLECEPHLHVAVLKHMIHGPCGVLNESSPCMKDGHCKKRYPKEFLDETRRGNDSYPQYRRRFHEPISINRNKSVDNRWVVPYNPWLLLKYDCHINVEVCSSIKSIKYLYKYVYKGPDRVAMEVHGGSTLDEVQQYVDARWICAPEALWKIFRFTMYRLYPSVERLQIHLPNRHQVRYYDHQRIVDVLNDERNSKTMLTQFFALNRRDPHSRNYLYREIPEHYWWNNKDKEWNRRLSLRKVIGRIYTVSPSEGEKFYLRVLLSHVKGPTSWEDLLTNNGTPFNTFKKAAEDRGYLEMDSSIRDCLVNASCVRLPYAIRRLFATILIFCEPTDVRSLWNEFFTHMTEDYQTNNNAVELNLTHMLLKDLNQLLEIHGKSTKDYDLPSLPAGATEENEIPSVIQEELSVRIPDEDMQAVAKLNNDQMNAFKIIMDVIERKKSQVFFIDGPGGTGGTGKTFLYRTLMATLRSQGQIVIATASSGIAATLLPGGRTAHSRFKLPFDAIPAFLMRIGDGVEPTKPDDMVKIPSRIAIPWEGEHSIQIFIDHIFPQLELHGWDASYMTQRAILTPKNDDVQKLNDILINQFPGEEHNLLSFDEVEGDTHNLYQQELLNSITQGGLPPHILKLKKGAPLMLLRNLDPRYGLCNGTRLLCRGLFMNMLDVEILTGSNAGKRAFLPRIKLKTSANSGLPFVLSRKQFPVRLSFAITINKSQGQTIPNVGIYLPRHVFSHGQLYVALSRGVSQNSTKVLIRDGKLQATRRRRVKKRVCTIPRAPDGSAFFNCGTCGVSVAISLADMHFCQSNKMEFKRFFGIVLNPTFPQNKQQLIENQPVSPYRLFMESFMKDQDMEIYNIEIDRIGFEKWKNMSEEEKQPFVSRARELDNKHQEALKEEADDIIKVRYGADSPMIDEMQWIFGESVEFSKE 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02744 1146 PANTHER UNCHARACTERIZED 182 724 - -
Tsu03g02744 1146 PANTHER UNCHARACTERIZED 729 953 - -
Tsu03g02744 1146 SMART hmgende2 1050 1116 IPR009071 -
Tsu03g02744 1146 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1050 1115 IPR009071 -
Tsu03g02744 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 686 965 IPR027417 -
Tsu03g02744 1146 SUPERFAMILY HMG-box 1052 1113 IPR036910 -
Tsu03g02744 1146 Pfam HMG (high mobility group) box 1053 1112 IPR009071 -
Tsu03g02744 1146 Pfam PIF1-like helicase 642 726 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tsu03g02744 1146 Pfam PIF1-like helicase 730 875 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tsu03g02744 1146 PANTHER ATP-DEPENDENT DNA HELICASE 182 724 - -
Tsu03g02744 1146 PANTHER ATP-DEPENDENT DNA HELICASE 729 953 - -
Tsu03g02744 1146 CDD SF1_C_RecD 925 967 - -
Tsu03g02744 1146 Gene3D High mobility group box domain 1042 1118 IPR036910 -
Tsu03g02744 1146 Gene3D - 639 741 IPR027417 -
Tsu03g02744 1146 CDD HMGB-UBF_HMG-box 1053 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02744 Tsu-Chr3 36495468 36505357 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu03g02744 PIF1 5e-35 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02744 - - ahf:112764544 744.577