Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02665 ATGGCGAGTGAAGGTGGTAAGAAACTAACTGAAGATGATGCCTTAGCATTTCTTATGGCAGTCAAGGATGTTTTCAAAGATGAAGAggaaaattttaattactttttagaaATAATGAATGATTACAAAGAAAAAAGaATAAATTATGGTGATCTTATGACAAAGGTTAGAGAATTATTTAAAGGACACAACGATCTAATTATAGGATTTAACATCTTTGCACCAAGTGATTATCAAATCCAAGTTTcacaagaagaaaaagaagacgAACAACAACAATCTCCTAATAGGAATAGGATTGTTGATGAATATGAAATTACAACTCCATTAGAAGAAGCAAAACATATTGATGCACAATCTCCTAAGAAGATGCTTGGTGGAGATAATCTCATTGTGGCTCCATCAGGGAATGAACCATGTCCAATGAAAAAACTTGGTGGATATGAAGATGCTACAAAATTTGTGAGCAAGATTAAGaTGGATGAGAATGAATCCATTGCAGAGTATTTCAACAAGATCACCAACATTACAAACCAAATGAAAAGTTGTGGATCAACTGTACATGATGGTGACATGGTTGAAAAGGGCAATGGCAACAAGAACAAGGGTAAAGATCAGTTCAAGAAAGAGAACTCTCAGCAAGAAAGCTCCAAGAAGAATGGTGACCAAGGTGACTCATCAAAATCTGATGGTAATGGCAAGGGTAAGAAGTTCATGAACAAGAAGCATATCCAATGCTATAACTGTCAGAAGCATGGTCACTTTGCTAGTGAATGCAGAGGCAAGAAAGATCCAAGACAGTACAATAATGAAGAATCAAAGGCAAATTTGGCACAAAATGATAGTGGTCCAGAAGCAGATCCACTGTTGATGATGGCAATCACCAATGAAGACTATGATAAGAAGGAAAGCTGGAAATCCAACATCAGATTTGCTGATAACAGAACCATCAAATCAAAAGGTGTAGGTGATGTGTTGATTCAAGGAAAGAATGGTAATCAAGCATTGATTACTGGTGTATTGTATGTGCCAAATATGCAGTCCAATCTCCTAAGCATGGGACAGTTAGTTGAAAAGGGGTTTACCATGACTTTGGGGAATAATCGAATGAAGGTCTACAATGTTGACAACAAACTGATCATGAGTGCTCCTTTGTCACAGAGCAGAACATTCCAGGTTCAATTCAATGCTTCAACATCTCACTGTCTTGCAAGTGAAGTTATCCATGAAGCAGCTTGGCTTTGGCATTTAAGGTATGGACATCTCAACTTTCAAAGTCTTAGTAACTTGAAGAGTAATGAGATGGTTAGTGGTTTACCAGTGATTAGAGTGCCAAAGGATATGTGTAGGAATTGCTTGGTTGGTAAGCAATccagaaaatcatttgttgatCACATTGCTATGAGAGCTAAGAACAAGCTAGATGTAGTCTATACTGATATTTGTGGACCTTTTGATACTGTATCTCTAGGAGGAAATAGATATTTTGTGTCATTTGTTGATGAATATAGCAGGATGATGTGGCTATATCtcattaaaacaaaagatgaagtgctgacaattttcaaaaaattcaaagcaCTAGTTGAAAAACAAGCTGAGAGTTCACTGAAGATATTAAGAAGTGATGGAGGAGGTGAGTATACCTCTCATGAGTTCAGAGATTTCTGTGCCACACAAGGTATCTCACATGAAATAACAGCTCCTTATACACCTCAGCACAATGGATTGTGTGAGAGGAGGAATAGAACAATTATGGATATGACAATATGTATGTTGAAGGAGAAAGGGTTACCTAATGAATTTTGGGGGGAAGCAGTGACAACATCTTGCTATGTATTGAACAAGAGCCCCACCAAAAGACTTGACAAGGTCCCTGAAGCAATCTGGAATGGTTCCACACCATCAGTGAAGCACTTAAGAGTATTTGGTTCACTATGCTATAGGCATATTCCAGATCAAAAGAGAAAGAAGTTGGATGATAAGAGTGAAGCACTAATACTGGTTGGCTATCACACTGCAGGGTCATACAAGATTTACAATCCAATGACAAAGAAGATTGTAGCTAGTAGAGATGTAACTATTAATGAGAAGAGTCAATGGAAGTGGGACAATGCAGGCACCAGTTCACAGCCAAATGTACCCTTCACCTTTGAAGATGTCATTGATGAGAATGACACTCCACAAGCTACTGCAACAATTGAACCAGAAGTAACACATGTTGAACCACATGTTGTAGCACATGTCAGAAGGTCAAATAAACCTAGAGTTTCAGTATGTAGACTGCTGGACTTTGACTCAATTCCAGATAATTTGGTAACTGATGATGGTGACTTAGTGCATCTGGCACTATTTGTTGACATGGAACCATTGAGCTATGCAAATGCAGCCAAGTCAGCAAAGCCAATAGCAGTCAAATGGGTGTATAAAGTGAAACATCTACCTGATGGGTCAATTGCAAAGCACAAAGCAAGGCTTGTGGCAAAAGGTTTCTTACAAAAACCTGGCATTGACTTCACAGAAATCTTTGCACCAGTTGCAAGATTAGAAACATTCAGAGTTGTGGTGGCCTTAGCAAATCAATTGAGCTGGCCTATTGTTCAACTAGATGTCAAGTCTGCATTTCTCAATGGCACACTTGAGGAGGAAGTGTATGTTGAACAACCACAAGGGTTCATAGTTAAAGGTCAAGAGGACAAGGTGTTGAAACTCAACAAGGCATTGTATGACTTAAAGCAAGCACCAAGGGCTTGGAACAAGAGAATAGATGATTTTCTGCAGCAAACTGGATACTCAAAGTGTACAGTAGAGCATGGAATCTACATAAAAGGTAAGAATCAGAATGATTTAAGCCTTGTGTGTCTGTATGTAGATGACTTATTGATTACTAGCAGCAATAGGAATGAAATTGAGAAGATCAAAGACCAAATGAGTGAAGAGTTTGACATGACAGATTTGGGAAAGTTGCAATATTTCCTTGGACTTGAATTTTCAAACACCAACAAAGGTCTAATAGTTcatcaaaagaaatatgttaCTGATGTATTGAAGAGGTTCAATATGATGAACTGTAATCTTGCTAATACACCTATGGAGACAAACTTGAAATTGAGTAATGATGAAGAGGGTGAATCAGTGGATGCCACACTCTATAAGTAG 3159 0.3675 MASEGGKKLTEDDALAFLMAVKDVFKDEEENFNYFLEIMNDYKEKRINYGDLMTKVRELFKGHNDLIIGFNIFAPSDYQIQVSQEEKEDEQQQSPNRNRIVDEYEITTPLEEAKHIDAQSPKKMLGGDNLIVAPSGNEPCPMKKLGGYEDATKFVSKIKMDENESIAEYFNKITNITNQMKSCGSTVHDGDMVEKGNGNKNKGKDQFKKENSQQESSKKNGDQGDSSKSDGNGKGKKFMNKKHIQCYNCQKHGHFASECRGKKDPRQYNNEESKANLAQNDSGPEADPLLMMAITNEDYDKKESWKSNIRFADNRTIKSKGVGDVLIQGKNGNQALITGVLYVPNMQSNLLSMGQLVEKGFTMTLGNNRMKVYNVDNKLIMSAPLSQSRTFQVQFNASTSHCLASEVIHEAAWLWHLRYGHLNFQSLSNLKSNEMVSGLPVIRVPKDMCRNCLVGKQSRKSFVDHIAMRAKNKLDVVYTDICGPFDTVSLGGNRYFVSFVDEYSRMMWLYLIKTKDEVLTIFKKFKALVEKQAESSLKILRSDGGGEYTSHEFRDFCATQGISHEITAPYTPQHNGLCERRNRTIMDMTICMLKEKGLPNEFWGEAVTTSCYVLNKSPTKRLDKVPEAIWNGSTPSVKHLRVFGSLCYRHIPDQKRKKLDDKSEALILVGYHTAGSYKIYNPMTKKIVASRDVTINEKSQWKWDNAGTSSQPNVPFTFEDVIDENDTPQATATIEPEVTHVEPHVVAHVRRSNKPRVSVCRLLDFDSIPDNLVTDDGDLVHLALFVDMEPLSYANAAKSAKPIAVKWVYKVKHLPDGSIAKHKARLVAKGFLQKPGIDFTEIFAPVARLETFRVVVALANQLSWPIVQLDVKSAFLNGTLEEEVYVEQPQGFIVKGQEDKVLKLNKALYDLKQAPRAWNKRIDDFLQQTGYSKCTVEHGIYIKGKNQNDLSLVCLYVDDLLITSSNRNEIEKIKDQMSEEFDMTDLGKLQYFLGLEFSNTNKGLIVHQKKYVTDVLKRFNMMNCNLANTPMETNLKLSNDEEGESVDATLYK 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02665 1052 SUPERFAMILY Ribonuclease H-like 470 627 IPR012337 -
Tsu03g02665 1052 Pfam GAG-pre-integrase domain 396 457 IPR025724 -
Tsu03g02665 1052 Gene3D - 239 287 - -
Tsu03g02665 1052 ProSiteProfiles Integrase catalytic domain profile. 469 634 IPR001584 GO:0015074
Tsu03g02665 1052 Pfam Zinc knuckle 245 260 IPR001878 GO:0003676|GO:0008270
Tsu03g02665 1052 SMART c2hcfinal6 245 261 IPR001878 GO:0003676|GO:0008270
Tsu03g02665 1052 SUPERFAMILY PAH2 domain 7 75 IPR036600 GO:0006355
Tsu03g02665 1052 PANTHER - 337 755 - -
Tsu03g02665 1052 PANTHER - 795 1046 - -
Tsu03g02665 1052 SUPERFAMILY Retrovirus zinc finger-like domains 228 266 IPR036875 GO:0003676|GO:0008270
Tsu03g02665 1052 ProSiteProfiles Zinc finger CCHC-type profile. 246 260 IPR001878 GO:0003676|GO:0008270
Tsu03g02665 1052 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Tsu03g02665 1052 MobiDBLite consensus disorder prediction 193 237 - -
Tsu03g02665 1052 MobiDBLite consensus disorder prediction 187 237 - -
Tsu03g02665 1052 MobiDBLite consensus disorder prediction 257 286 - -
Tsu03g02665 1052 Pfam Paired amphipathic helix repeat 32 73 IPR003822 GO:0006355
Tsu03g02665 1052 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 797 1032 IPR013103 -
Tsu03g02665 1052 Gene3D - 466 660 IPR036397 GO:0003676
Tsu03g02665 1052 SUPERFAMILY DNA/RNA polymerases 798 1012 IPR043502 -
Tsu03g02665 1052 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Tsu03g02665 1052 Pfam Integrase core domain 475 572 IPR001584 GO:0015074
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02665 Tsu-Chr3 33897322 33903673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02665 801 1052 Receptor kinase-like Gene Family AT4G23160 37.500 1.14e-51 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu03g02665 RVT_2 4.9e-81 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02665 - - gmx:100794549 681.789