Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02663 ATGAAGATGTATCAGCAAGATGAATTTGAACTGATGGTGGACAATAAGTCAGCAATAAGCCTTGCAAGAAATCCCATAGCACATGGCAGAAGCAAGCACATTGAAACCAAGTTTCACTACCTTAGAGATCAAGTCACCAAAGGAAAGCTGAAACTTACACATTGCAGAACAGAACTCCAAGTAGCTGACATATTGACCAAGCCATTGAATATTGAAAGGTTCAAAGACCTTAGAGGAATGTTGAAAACTCGGTTTGAAGGAGATGGCCATGTTTCCAAGTCATTTCTCAACATCATGAACATGTTGGGAGAGGGAAAAAAATCTTACACTGATACTTACCATGAGGTTGCTGCACTTTTGGAAGGTCATGCAGATCTTCTTGATGagttaattcatttttttcctGGCACTTCAAGAGTAGAAGCCTCtacttaa 435 0.3816 MKMYQQDEFELMVDNKSAISLARNPIAHGRSKHIETKFHYLRDQVTKGKLKLTHCRTELQVADILTKPLNIERFKDLRGMLKTRFEGDGHVSKSFLNIMNMLGEGKKSYTDTYHEVAALLEGHADLLDELIHFFPGTSRVEAST 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02663 144 Gene3D Paired amphipathic helix 79 135 IPR036600 GO:0006355
Tsu03g02663 144 SUPERFAMILY PAH2 domain 79 135 IPR036600 GO:0006355
Tsu03g02663 144 CDD RNase_HI_RT_Ty1 1 70 - -
Tsu03g02663 144 PANTHER - 6 81 - -
Tsu03g02663 144 Pfam Paired amphipathic helix repeat 93 133 IPR003822 GO:0006355
Tsu03g02663 144 ProSiteProfiles PAH domain profile. 67 137 IPR003822 GO:0006355
Tsu03g02663 144 PANTHER GAG-POL-RELATED RETROTRANSPOSON 6 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02663 Tsu-Chr3 33895491 33896925 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu03g02663 PAH 6.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02663 - - gmx:121173059 106.301