Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02659 ATGAGTTCACAACTCAAACGTCCTGTGTTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAAGTGATGAGTGGTGGTCAGAAGTTAACGACAAATGATGCCTTATCATATCTAAAGGCAGTACGAGAAATGTTTCAAGATGACAAAGAAAAGTATGATGAATTTTTGGAAGTCATGAAGGATTTTAAGGCCCAAAGAATTGATACGGCTGGTGTCATAGAAAGAGTAAAGGAGCTGTTTAAAGGCcataaagatttaattttgggGTTTAACACCTTCTTGCCAAAGGGTTATGCCATCACACTTCCATCGGAAAATGAACCACCTCCATTGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTAGGCAAGATCAAGACTCGTTTTCAAGGCAATGATCGTGTTTATAAGACTTTCTTAGACATATTAAATATGTACAGAAAGGAAACCAAGACTATCACCGTGGTTTACCAAGAGGTCTCTGCCCTCTTCCAAGACCATGCAGATCTTCTTGAGGAGTTCACTCATTTTCTTCCTGATACTTCCGGAGCAGCCGCTGCTCATTTTGCTTCTGCTTCTGCTCGTAATTCTCTCCGTGATAGGAACTCTGCAATGGCAACAGCGAGGCAAACACATGTTGAAAagAGAGAAAAGACAATAGCTTTGCACGCTGATCGTGATCTCGGCGTTGATCATTCTGATCCAGAACTTGACAGAGGTGTGATGAGGGCTGATAAGGAGCAGAGAAGACGCGAGAGAGAAAAGGACCGTAGAGAAGAAAGAGATAGGAGAGAAAGGGATGATAGAGATTATGATAATGATGGTAATCGGGAGCGTTTATCCAACAAGCGAAAATCTGGTCACAGAGACCCTGGCACTGAACCATCGCATGACGCAGATGAAAAGCTTGACATGCACCCTATCTCGTCCGCTTCCGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCCAGTGCTTGCCTTCCTTGAAAAAGTAAAGGAGAAGTTAAGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTTCATATCTACAGCAGGGAAATAATCACCCGACAAGAACTACTGGCACTGGTGGGTGATTTACTGGGAAAATATGCTGATATTATGGAGGgatttgatgattttgtgaCACAGTGTGAAAAGAATGAAGGATTCCTTGCCGGAGTCATGAATAAAAAATCCTTGTGGAATGAAGGACATGGACCAAAACCAGTGAAGGTAGAGGACAAGGACAGAGATCGGGACAGGGATGATGGGGTGAAAGAAAGGGAACGTGAACTCCGAGAAAGAGACAAATCCACTGGAATTGCCAACAAGGATGTTTCTATTCCTAAGGTGTCTTTAAGCAAAGACAAGTATGTAGGAAAACCTATAAATGAACTGGACCTTTCGAACTGTGAACAATGTACTCCTAGTTACCGTCTTCTTCCAAAAAATTACCCAATACCAATAGCCAGCCAAAGAACTGAACTTGGTGACGAAGTATTGAATGATCACTGGGTCTCTGTTACATCAGGCAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACGAATAAGAAAGTTGAAGAGATCTTAGACAAAGTTAATGCTAATATAATTCAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACACCCCTCAATCTTAGGTGCATTGAACGGTTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAAAAAGAATGCCTCTCTAGCTTTGCCAGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGTGcagattttaataaagtttgGGCTGAAATATATGCGAAGAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCactaaagCCTTATTGGGAGAGATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCGATTGCTGCTGGAAATAGACGGCCGATTCTTCCTAACTTGGAATTTGAGTATCCTGATCCAGATATTCACGAAGATTTGTATCAACTCATAAAATATTCATGTGGAGAAGTTTGTACAACCGAACAATTGGATAAAGTCATGAGGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACGGCGCATTGCCGAAGACACAGAAGATGCTGTCAAGGCTAAGAATGATTGTGCAAAAACTGGCACTGCAAGTATTGCCAAGGGTGATAGTAGTCCTGGTGTTGGTGTCACCGTAATGAATCCTAAGAATTCAAATAGTAATAGAAATGGGGATGCTAGTGTTCCATTTCAACAATCAAATTCTTGCAAAGAATGGCAGACTAATGGGGTTGGTGGTGTTAAAGGGGACGGTTGTCTTGAATCAGACCGTTCTGCACCCAAGAATGAAACTTTGGGAAGTAGTACACTGCAAGGTAAAATTCATATAAGTGCATCCATTCCTGATGAAGTATCAAGAATCAATAAGCAAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTATCACTGTCCTCTGTAATGGAGCAAAGTAATGGAAGAACAAACATTAGTAATGCATCAGGACTTGCTGCAACTCTGTCTAGACCTGGTTATGTTTCTAGTGAGGGAGGGCTTGATTTACCTTCAGAGGGTGCTGATTCTACAAGACCAGATACGTCCACAAATGGGGCCATCACCGAAGGCACCAAAGTTCACAGATGTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAATTATCGCCTAATGGAGATTTTGAGGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGTGCATAAAGGAAAAGATTGTAATACCAGTCAACAATACCAAAATAGACATGGAAAACAGATTTGTGGTGAAGCTCGAGGCGTAAATGACGATGAAAGTGATAGAAGTCCTCATAGATCATCGGACGACAGTGAAAATGCATCTGAGAATGGTGATGTTTCTGGTACAGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGGATGGGGATCACGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGGTGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGACGGAGCCTCATTGCCATATTCAGAGCGCTTTCTTCTCACTGTAAAGCCTCTGGTAAAACATGTTCGTCCAGTGTTGCATGGGAAAGACAAAaatgttcaaattttttatggaaatgatTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCTTCTGCTGAAAGGAAATGGAGAGCTTCAAATGATACAAGTTCTACTGATCAATATGGCAGGTTCATGAATTCTCTTTACAGTTTACTGGATGGTTCTTCtgataattcaaaatttgaggATGACTGTAGAGCTATTATTGGAACTCAGTCATATGTCTTGTTCACGTTGGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGCCACTGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAGCAATCAAGAAAACCCGGAAGCTTTGCTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAGCGTTCATCTACACCGACTCGATTGTCTATTCAGTTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCTGTGGCAATAGATCCTAATTTTTCAACATATCTGCACAATGATTTCCTATCTGTTGTCTCTGACAGTAAGGAGAAGTCAGGAGTTTTCTTAAGAAGgaataaaataaaatgtggcTGGAGTGATGAATTATCAAGCCAGGTCATAGATGAAGTTCAAGTTATCAATGGTCTGGAGTGTAAGATTTCTTGCAATTCATCCAAGGTTTCATATATCACAGCGGTTCTGcaaattattttccatcaaaTGATGGTATCCAATTTGAGCTACATATGTAATTTTGGCCATGCATCAGTGACACCGGCAGATGGCGATGACACCGCATCCAAGAAATTCCCAGTAACCAAATAA 4215 0.3983 MSSQLKRPVLSSRGEPSGQPQVMSGGQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPSENEPPPLKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKTITVVYQEVSALFQDHADLLEEFTHFLPDTSGAAAAHFASASARNSLRDRNSAMATARQTHVEKREKTIALHADRDLGVDHSDPELDRGVMRADKEQRRREREKDRREERDRRERDDRDYDNDGNRERLSNKRKSGHRDPGTEPSHDADEKLDMHPISSASEDKSSLKSMCSPVLAFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDDFVTQCEKNEGFLAGVMNKKSLWNEGHGPKPVKVEDKDRDRDRDDGVKERERELRERDKSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGDEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKKVEEILDKVNANIIQGDIPIRIEEHLTPLNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLGEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMRIWTTFLEPMLGVPSRRRIAEDTEDAVKAKNDCAKTGTASIAKGDSSPGVGVTVMNPKNSNSNRNGDASVPFQQSNSCKEWQTNGVGGVKGDGCLESDRSAPKNETLGSSTLQGKIHISASIPDEVSRINKQDHSIEQLVNANVSLSSVMEQSNGRTNISNASGLAATLSRPGYVSSEGGLDLPSEGADSTRPDTSTNGAITEGTKVHRCHKESVGHFKSEREEGELSPNGDFEEDNFAVYANAGLEAVHKGKDCNTSQQYQNRHGKQICGEARGVNDDESDRSPHRSSDDSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEGEGMADANDVEGDGASLPYSERFLLTVKPLVKHVRPVLHGKDKNVQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDQYGRFMNSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQSRKPGSFADIVYHENARVLLHDENIYRIERSSTPTRLSIQLMDYGHDKPEVTAVAIDPNFSTYLHNDFLSVVSDSKEKSGVFLRRNKIKCGWSDELSSQVIDEVQVINGLECKISCNSSKVSYITAVLQIIFHQMMVSNLSYICNFGHASVTPADGDDTASKKFPVTK 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 212 306 - -
Tsu03g02659 1404 SUPERFAMILY PAH2 domain 325 389 IPR036600 GO:0006355
Tsu03g02659 1404 Coils Coil 548 568 - -
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 926 940 - -
Tsu03g02659 1404 Pfam Sin3 family co-repressor 477 567 IPR013194 -
Tsu03g02659 1404 ProSiteProfiles PAH domain profile. 320 389 IPR003822 GO:0006355
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 202 306 - -
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 412 443 - -
Tsu03g02659 1404 SUPERFAMILY PAH2 domain 26 96 IPR036600 GO:0006355
Tsu03g02659 1404 Gene3D Paired amphipathic helix 112 184 IPR036600 GO:0006355
Tsu03g02659 1404 Gene3D Paired amphipathic helix 319 391 IPR036600 GO:0006355
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 1 27 - -
Tsu03g02659 1404 SMART hdac_interact2seq4b 475 575 IPR013194 -
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 1044 1072 - -
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 994 1085 - -
Tsu03g02659 1404 ProSiteProfiles PAH domain profile. 113 183 IPR003822 GO:0006355
Tsu03g02659 1404 Coils Coil 246 266 - -
Tsu03g02659 1404 SUPERFAMILY PAH2 domain 109 182 IPR036600 GO:0006355
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 1008 1031 - -
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 407 443 - -
Tsu03g02659 1404 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 6 1370 - -
Tsu03g02659 1404 Gene3D Paired amphipathic helix 33 95 IPR036600 GO:0006355
Tsu03g02659 1404 Pfam Paired amphipathic helix repeat 137 180 IPR003822 GO:0006355
Tsu03g02659 1404 Pfam Paired amphipathic helix repeat 342 385 IPR003822 GO:0006355
Tsu03g02659 1404 Pfam Paired amphipathic helix repeat 50 94 IPR003822 GO:0006355
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 909 971 - -
Tsu03g02659 1404 Pfam C-terminal domain of Sin3a protein 1119 1360 IPR031693 -
Tsu03g02659 1404 ProSiteProfiles PAH domain profile. 27 97 IPR003822 GO:0006355
Tsu03g02659 1404 PANTHER SIN3B-RELATED 6 1370 IPR039774 GO:0003714
Tsu03g02659 1404 MobiDBLite consensus disorder prediction 942 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02659 Tsu-Chr3 33741388 33752820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02659 19 109 WRKY Transcription Factor Family AT4G12020 55.319 2.49e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu03g02659 Sin3a_C 1.4e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02659 K11644 - gmx:100781798 1982.22