Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02649 ATGGATGCTAAGAGTGGTCTTTTTGCAGGGTCTCTTAACAGCAATGAACTTGTGGTCATCCAAGGACACAATGAGCCTAAGACAGTGAAGAACTTGGATGGCCAAGTATGTGAGATATGTGGCGATTCTGTAGGGCGTACGGTAGATGGTGACTTATTTATAGCTTGCGAAGAGTGTGGTTTCCCTGTCTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGCACTCAAGTTTGCCCTCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGTCCAAGAGTTGAgggagatgaagatgaagaagacgTGGATGACATTGAATACGAATTCAAAATGGAAGAGGAAAAGTACAAGCATAAGCATGAAGAAAATATGAGTGgtagagatgatgatgatgatgattatgagaATACTAAATATGGGGAGCTGCCCTTATTTTCTCACAGGGGTGCAAATTTTGATAACAAGGAGAAAACAGATGATTGGAAGTTGCAACAAGGCAATCTGTTGATTGAAACTGATGCAGTTGATCCTGAAAAGGCCATGAAAGATGAAACTAGACAGCCACTTTCAAGGAAAGTGGCAATACCATCAGGAAAACTCAGTCCTTACAGAATGATGGTTGTGACTAGGCTGATCCTTCTAATACTCTTCTTTGAGTACAGAATCTTCCATCCTGTACCTGAAGCCATTGGACTTTGGTTCATATCTGTAGCATGTGAAATCTGGCTTGCATTATCATGGATGGTTGATCAGATTCCCAAATGGTTTCCCATTGATCGCGAGACATACCTTGATCGCCTTTCAGTCAGGTTTGAACCGGAAAACAAGCCGAACATGCTATCTCCTATTGATATCTTTATAACAACTGTGGATCCAATTAAGGAACCTCCTCTTGTTACAGCCAATactattctttcaattttggCACTAGATTATCCTGCGCATAAAATTTCATGCTACATTTCTGATGACGGTGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAATTCGCGCAAAAATGGGTACCTTTTTGTAAACAATTCTCTGTAGAGCCTCGAGCACCAGAGAAGTATTTCTCTGAGAAGGTAGATTTTCTGAAGGATAAGATTCAGACCACATATGTAAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAAGTGAGAATCAATGCACTTGTGGCTAAATCCATGAGAGTTCCCTCAGAAGGTTGGAGTATGAAAGATGAGACACCATGGCCAGGAAACAATACAAAAGATCATCCAAGTATGATACAAATTCTTCTTGGTCATAATGGAGGAGACAATAAAGAGAACGAACTTCCGTCTCTTGTCTACATCTCTAGAGAGAAAAGGCCTGCATTTCAACATCACACAAAAGCCGGCGCAATGAATGCCTTGCTTCGTGTATCGGCTGTGTTGAGCAACGCTCCGTTTGTGCTCAATTTGGATTGTAATCATTATGTGAATAACAGCAAAGTTGTGAGAGAAGCCATGTGTTTCTTTATGGACATTCAACTTGGGAATAGCATTGCCTTTGTCCAGTTCCCTCTAAGATTTGATAGTCTTGATAGAAATGATCGTTATGCCAATAAgaacactattttatttgatATTAACTTGAGGTGTTTAGATGGAATTCAAGGACCTGTTTATATTGGATCAGGTTGTATATTCAGAAGGAAGGCATTAAATGGCTTTGATCCTCCTAAGGCGGCAAAGCGCTCTCAAATCGTACAAGTACACTCAAAACaggatgaaaatggagaggatgaAAGCATTATAGaaGCAACAGATGAAGACAAGCAGCTATTGCAATCGGATATGAATACTGAGAATAAATTTGGAAAGTCTACACTCTTCATGAATTCTTCATTAACAGAAGAAGGTGGTGTAGATCCTTCTTCAACTCAAGAAGCCTTGCTTAAAGAGGCCATTCATGTCATGAGTTGTAGCTACGAAGACAGAACACATTGGGGATACGagGTTGGTATGAGCTATGGATCTATAGCAGCAGATACTCTTACAAGTTTAAAGATGCATACTCGCGGTTGGAGATCGGTGTACTGCATGCCAAAGAGGGCTGCTTTTCGAGGAACAGCACCAATCAATCTCACAGAAAGACTTAACCAAGTTCTTAGATGGGCCGTGGGATCACTTGAAATCCTATTCAGCCGCCACTGCCCATTGTGGTATGGTTTTAAGGAAGGAAGACTCAAGGTTCTTCAAAGGATTGCCTATATTAACAGCACTGTCTACCCTTTTAGTGCATTTCCTCTCATAATCTATTGTATTGTTCCGGCCGTCTGCTTGCTCACTGACAAATTCATCACACCATCGGTAGGAACATTTGCAAGTCTAGTATTCATTTCTCTATTCATCTCAATCTTTGCTTCTGCCATTCTTGAACTAAGATGGAGTGGAGTTAGTCTTGAGGAATGGTGGAGAAATCAACAATTTTGGGTCATTGGAAGTGTATCAGCACATCTCTTTGCAATTGTACAAAGCCTAATGGGAGGATTCCTTAGTAGAGTCAATGCACATTTCAGCATTGTATCAAAGGCACCGGACGACGATGGCGACTTTAACGAATTATACACTATTAGATGGACAATACTACTAATACCTCCAACCACAGTCACAATAATCAACCTTATTGGTATTGTTGCCGGTTTCACAGATGCTATAAATAGTGGTGAACATGAATGGGGAATATTGATTGGAAAACTGTTTTTTGCTTCATGGGTTATTGCTCATCTTTATCCTTTCCTTAAAGGACTAATGGGAAGACAGAATAGAACACCAACACTTATTGTTATTTGGTCTGTTCTTTTGgcttctattttttctttggtttggGTAAGAATTGACCCTTTTGTGTTGAAAACTAAAGGGCCTGATGTTAAACAATGTGGAATTAGTTGTTGA 2949 0.3859 MDAKSGLFAGSLNSNELVVIQGHNEPKTVKNLDGQVCEICGDSVGRTVDGDLFIACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEEDVDDIEYEFKMEEEKYKHKHEENMSGRDDDDDDYENTKYGELPLFSHRGANFDNKEKTDDWKLQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGKLSPYRMMVVTRLILLILFFEYRIFHPVPEAIGLWFISVACEIWLALSWMVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFITTVDPIKEPPLVTANTILSILALDYPAHKISCYISDDGASMLTFEALQETAEFAQKWVPFCKQFSVEPRAPEKYFSEKVDFLKDKIQTTYVKERRTMKREYEEFKVRINALVAKSMRVPSEGWSMKDETPWPGNNTKDHPSMIQILLGHNGGDNKENELPSLVYISREKRPAFQHHTKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDRNDRYANKNTILFDINLRCLDGIQGPVYIGSGCIFRRKALNGFDPPKAAKRSQIVQVHSKQDENGEDESIIEATDEDKQLLQSDMNTENKFGKSTLFMNSSLTEEGGVDPSSTQEALLKEAIHVMSCSYEDRTHWGYEVGMSYGSIAADTLTSLKMHTRGWRSVYCMPKRAAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPLWYGFKEGRLKVLQRIAYINSTVYPFSAFPLIIYCIVPAVCLLTDKFITPSVGTFASLVFISLFISIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHLFAIVQSLMGGFLSRVNAHFSIVSKAPDDDGDFNELYTIRWTILLIPPTTVTIINLIGIVAGFTDAINSGEHEWGILIGKLFFASWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02649 982 Coils Coil 383 403 - -
Tsu03g02649 982 MobiDBLite consensus disorder prediction 115 135 - -
Tsu03g02649 982 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Tsu03g02649 982 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 424 577 IPR029044 -
Tsu03g02649 982 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 274 379 IPR029044 -
Tsu03g02649 982 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Tsu03g02649 982 SUPERFAMILY Nucleotide-diphospho-sugar transferases 297 770 IPR029044 -
Tsu03g02649 982 PANTHER CELLULOSE SYNTHASE 1 982 - -
Tsu03g02649 982 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 982 - -
Tsu03g02649 982 SUPERFAMILY RING/U-box 22 107 - -
Tsu03g02649 982 Pfam Cellulose synthase 285 976 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tsu03g02649 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Tsu03g02649 982 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02649 Tsu-Chr3 33440888 33446946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02649 1 982 Cell Wall Biosynthesis AT5G17420 64.535 0.0 1386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02649 K10999 - gmx:100777270 1610.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04723 04 54611672 54617050 Tsu03g02649 03 33440888 33446946 PCT