Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02618 ATGAATGTTACTCGTTCTGCTTTGAAACTCCATCTTCAAACTTCACCAATTCGCTTCAACAATGCTCTTCGCAATCCCATTTCACCTTCTTCTCTATTCAATTTCAAAGCAACGCGTTTCTTTTCTCTAACCCTTCCACGCCAAACGCAGTCACAATCTGCCGTTGGAACCGCCGCTTCATCACAAGGTCGAGATACCTTCTTTGCTCAAGAAACTGTTTCATGGAGTTCACTTGGTCTTTCTGATACTCTCTCTGTTGCTCTCTCTAAAATTGGACTCAAAACACCCTCTCTTGTCCAGGCTTCTTCTATTCCATCTGTGTTGTCAGGGAAGGATGTAGTTATTGCTGCGGAGACCGGCAGTGGTAAGACATACAGTTATCTACTCCCTCTCATTGATAAGCTGAGTGATACACAAGAACATTCTCTAGATGTTGTATCTGATAAAGGAGTCTATCCGCCGGCCAGGAAAGTTCTGCTTGTGCTCTGTCCGAATGTACAATTGTGTGAGCAGGTAGCTAGTATGGCTAATAGTCTCTGTAGCGACAATGGTGGAACCATTGTTAATGTGGCATCCATTTGTGGAAGACAGGGATGGCCAATTCGGGAACCTGACATCATTGTGACAACACCTGCCGCTCTTCTTAATCATGTTGACGTTGATAGAACTCGACGCATGAAATTTATGCATGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTATGATGAAAAAATCACATCTCGATCAAAATCGTCAGTAGCAGTGTTGCCAAGTCTGGAATCTTCTTTGTCGTCAGATGATGCTttggaagatgaagaggaatttTCAATTGAAGCCATCTCAGACGAGGAGGAGGATGATAAGAGCGAGGATATTGCTAATATTGATAACGAAGTTGAATCTATTAAGAAAAGAAGGAATGATTGGAGGAGAGTTAGGAAACATTTTGAGCGTAGTAAACAATATGTTTTCGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGCATTGTTGAAACACATGTTTCCCGATGCTGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGatTGAAGCAAAGATGGATAGAAGTGACCGTTGATACACAGGTGAAAGAACTCATAAGGGCTGTGAAACACAGTTTAAAATCTGAAGATTTGGATAATGGCGGTGGCATTCATAGAACAATGGTATTTGCCAACACTGTTGATGCTGCTGAAGCTGTTGCAAAGATATTGAGCTATGATGGGCTTGAATGTTTACGCTATCATAAGAATTGCAAATTGGAAGAGCGAGCACAAGCATTAATTGATTTCCGCGAGATTGGTGGTGTCCTTGTATGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCAAATGTCTCTCATGTTATTCAGGCAGATTTTGCTACTTCTGCAGTAGACTTTTTGCATAGGATTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTAGTTACTAACATGTATACCGAGTCCAACAAGGAGCTTGTAGATGCAGTTCGTCGTGCAGAGGAACTCGGTCTACCTATGGAGACCGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGATTAAAAAGAAAGCGATTGCTGACAAAGTCAGAGATTCTGCGACCATTGAAGAGAGTGTTACAGCGTGA 1734 0.4187 MNVTRSALKLHLQTSPIRFNNALRNPISPSSLFNFKATRFFSLTLPRQTQSQSAVGTAASSQGRDTFFAQETVSWSSLGLSDTLSVALSKIGLKTPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLLPLIDKLSDTQEHSLDVVSDKGVYPPARKVLLVLCPNVQLCEQVASMANSLCSDNGGTIVNVASICGRQGWPIREPDIIVTTPAALLNHVDVDRTRRMKFMHGVKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKITSRSKSSVAVLPSLESSLSSDDALEDEEEFSIEAISDEEEDDKSEDIANIDNEVESIKKRRNDWRRVRKHFERSKQYVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHCHNPRLKQRWIEVTVDTQVKELIRAVKHSLKSEDLDNGGGIHRTMVFANTVDAAEAVAKILSYDGLECLRYHKNCKLEERAQALIDFREIGGVLVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRIGRTARAGQIGLVTNMYTESNKELVDAVRRAEELGLPMETAFSRKRSFRNKIKKKAIADKVRDSATIEESVTA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02618 577 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 367 IPR014001 -
Tsu03g02618 577 Pfam Helicase conserved C-terminal domain 419 512 IPR001650 -
Tsu03g02618 577 Pfam DEAD/DEAH box helicase 99 265 IPR011545 GO:0003676|GO:0005524
Tsu03g02618 577 Gene3D - 384 577 IPR027417 -
Tsu03g02618 577 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 547 - -
Tsu03g02618 577 CDD DEADc 87 262 - -
Tsu03g02618 577 Gene3D - 44 365 IPR027417 -
Tsu03g02618 577 SMART helicmild6 432 512 IPR001650 -
Tsu03g02618 577 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 553 IPR001650 -
Tsu03g02618 577 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 47 547 - -
Tsu03g02618 577 CDD SF2_C_DEAD 383 521 - -
Tsu03g02618 577 SMART ultradead3 92 386 IPR014001 -
Tsu03g02618 577 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 73 101 IPR014014 GO:0003724
Tsu03g02618 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 524 IPR027417 -
Tsu03g02618 577 Coils Coil 312 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02618 Tsu-Chr3 32625835 32633112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02618 316 540 Eukaryotic Initiation Factors Gene Family AT5G11200 28.516 2.53e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02618 - - gmx:100780518 779.245