LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g02607	ATGGTTTCATCTGATTTGTGCGAGAAATCTTCTGATTTGTTGTCTCAGTACATGAATTACAAAGTTAACAAAACTGTTAATTGGAGTTGTTTTAGTTGCAAGAGTTTTGAGTGTTTAAATGGACCTGGTTGTTCCTCACTTGGATATGGAGCCTTTGAGGAGCTGGGACCCTTCAGAGTAAACTCTGATGGAAAAACACTATATCGAAACCAATATGCTTGGAATGAAGTTGCAAATGTACTCTTCTTAGAATCTCCTGCAGGAGTAGGATTTTCCCACTCAAACACAACTTCTGACTATGACAAGTCAGGAGATAAGAGAACTGCACAGGATGCTTATGTCTTCCTAATCAACTGGCTGGAGAGATTTCCACAGTACAAAACCAGAGATTTTTACATAACTGGAGAAAGTTATGCTGGTCATTATGTTCCTCAACTTGCATCCACTATTATTCAAAACAATATACACTATAAACAAACCATTATTAACCTCAAAGGCATTTCTATGGGGAATGCTTGGATTGATGATGCCACAAGTTTGAAGGGgttatttgattatttatggACTCATGCTTTGAACTCAGATCAAACTCATGAGTTAATTGAGAAGTACTGTGACTTCACTACTGAAAATACTTCAGCAATATGTAACAATGCAACAGATAGGGCTTTAATTGAGAAAGGACGCATAGACTTCTATAACATCTATGCTCCATTGTGTCATGACTCTTCTCTAAAATATAGTTCAACAGGTTATGTAACTAAAGATTTTGACCCTTGTTCTGATTTGTATGGTAATGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTTCATGCAAAACCTACAAATTGGAGCCATTGCAGTCATGTTATTCGTACCTGGAATGACAGTCCAGTTACCATCCTACCCACCATCAAGTATCTCATTGATAGTGGCATTAAATTATGGATATACAGTGGTGATACTGATGCAAGAGTTCCAGTCACATCTTCAAGATATTCAATCAACGCCCTCAAGCTTCCTATCAACTCGGCATGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGGTATGTGGTGGGATACAAAGGATTGACATTTGTCACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGAAAGAGCTTTGACTTTGATCTCATCATTCATCTATGGAGTCTTGCCACCTGTTTCACCATCAAATTAA	1218	0.3826	MVSSDLCEKSSDLLSQYMNYKVNKTVNWSCFSCKSFECLNGPGCSSLGYGAFEELGPFRVNSDGKTLYRNQYAWNEVANVLFLESPAGVGFSHSNTTSDYDKSGDKRTAQDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTIIQNNIHYKQTIINLKGISMGNAWIDDATSLKGLFDYLWTHALNSDQTHELIEKYCDFTTENTSAICNNATDRALIEKGRIDFYNIYAPLCHDSSLKYSSTGYVTKDFDPCSDLYGNAYLNRPEVQKALHAKPTNWSHCSHVIRTWNDSPVTILPTIKYLIDSGIKLWIYSGDTDARVPVTSSRYSINALKLPINSAWRPWYSGNEVGGYVVGYKGLTFVTVRGAGHLVPSWQPERALTLISSFIYGVLPPVSPSN	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g02607	405	Gene3D	-	260	294	-	-
	Tsu03g02607	405	ProSitePatterns	Serine carboxypeptidases, histidine active site.	366	383	IPR033124	GO:0004185
	Tsu03g02607	405	SUPERFAMILY	alpha/beta-Hydrolases	41	398	IPR029058	-
	Tsu03g02607	405	PANTHER	CARBOXYPEPTIDASE	40	401	-	-
	Tsu03g02607	405	Gene3D	alpha/beta hydrolase	36	242	IPR029058	-
	Tsu03g02607	405	Pfam	Serine carboxypeptidase	41	395	IPR001563	GO:0004185\|GO:0006508
	Tsu03g02607	405	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	40	401	IPR001563	GO:0004185\|GO:0006508
	Tsu03g02607	405	ProSitePatterns	Serine carboxypeptidases, serine active site.	133	140	IPR018202	GO:0004185
	Tsu03g02607	405	Gene3D	-	302	396	-	-
	Tsu03g02607	405	PRINTS	Carboxypeptidase C serine protease (S10) family signature	119	144	IPR001563	GO:0004185\|GO:0006508
	Tsu03g02607	405	PRINTS	Carboxypeptidase C serine protease (S10) family signature	366	379	IPR001563	GO:0004185\|GO:0006508
	Tsu03g02607	405	PRINTS	Carboxypeptidase C serine protease (S10) family signature	70	82	IPR001563	GO:0004185\|GO:0006508
	Tsu03g02607	405	PRINTS	Carboxypeptidase C serine protease (S10) family signature	83	93	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g02607	Tsu-Chr3	32446701	32450701	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g02607	268	396	Calmodulin-binding Proteins	AT2G22960	29.412	7.51e-12	62.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g02607	K16297		-	gmx:100779407	624.009