Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02596 ATGAGCAACTTtgatgtttcttcttcttcttctttattgaTGTTGTCTCCtaaaaaatatgatgttttTCTTTGCTTTCGAGGCGAAGATACTCGCGACAACATCACAAGCCATCTTCATGAAGCAATGAAGCAAAAGAAAGTTGAAACATATATAGACAACAGGCTTGAAAAAGGAGAGGGAATTGGGCCATCACTTATCACAGCAATTGAAGAATCACATGTTTCTGTTATCATTTTCTCAGAAAACTATGCTTCCTCCAAGTGGTGTTTGGATGAAATTGTGAATATTATGGAATGCAAGAAAGAAAGAGGACAAATTGTGATACCTGTGTTCTACAAAATAGATCCTTCACATGTGAGAAATCAGAGAGGGACATATGAGAAATGGTTTGAGAAACATGAGTTAGATTTCAAGGGCAAAAATAGTTACAAAAAAGTGTTCAATTGGAGAAGTGCTCTCACAGAAGCAGCTAATTTGGCTGGTTGGGATTTTCAAACTTAtagAGAAGTTCGAGTGATTGGGATATGGGGCATGGGAGGCATAGGTAAGACCACCCTAGCAATTGCTTTACGTGACAAATTGTCTTCTCAATTTGAAGGTCATTGCTTTTTGGCAAATGTAAGGGAACAAATAGAGAAGAATAATATAGATTTCTTGCGCAACAAGCTTTTTTCAGAGCTATTACAAGAAGAAAATCTTCATGTTAATGTACCAAAAGTTGAATATCATTGTGTGACCAATAGGCTTAGACGGAAAAAAGTTCTTATTGTTTTGGAAGACGTGGCTACCTCAGAACAATTAGATGATCTAATCAACGATTACGGTTGTTTGGGACCAGGAAGTAGAGTGATTGTAACCACTAGAGATAAGCACATAATTAACCATGTTGATGAAATATGA 903 0.3511 MSNFDVSSSSSLLMLSPKKYDVFLCFRGEDTRDNITSHLHEAMKQKKVETYIDNRLEKGEGIGPSLITAIEESHVSVIIFSENYASSKWCLDEIVNIMECKKERGQIVIPVFYKIDPSHVRNQRGTYEKWFEKHELDFKGKNSYKKVFNWRSALTEAANLAGWDFQTYREVRVIGIWGMGGIGKTTLAIALRDKLSSQFEGHCFLANVREQIEKNNIDFLRNKLFSELLQEENLHVNVPKVEYHCVTNRLRRKKVLIVLEDVATSEQLDDLINDYGCLGPGSRVIVTTRDKHIINHVDEI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02596 300 Pfam TIR domain 19 212 IPR000157 GO:0007165
Tsu03g02596 300 SMART till_3 19 160 IPR000157 GO:0007165
Tsu03g02596 300 PRINTS Disease resistance protein signature 173 188 - -
Tsu03g02596 300 PRINTS Disease resistance protein signature 249 263 - -
Tsu03g02596 300 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 145 IPR044974 GO:0006952
Tsu03g02596 300 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 145 - -
Tsu03g02596 300 Gene3D - 1 154 IPR035897 -
Tsu03g02596 300 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 163 IPR035897 -
Tsu03g02596 300 Pfam NB-ARC domain 171 298 IPR002182 GO:0043531
Tsu03g02596 300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 298 IPR027417 -
Tsu03g02596 300 ProSiteProfiles TIR domain profile. 18 195 IPR000157 GO:0007165
Tsu03g02596 300 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 168 298 - -
Tsu03g02596 300 Gene3D - 155 299 IPR027417 -
Tsu03g02596 300 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 168 298 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02596 Tsu-Chr3 32277338 32278945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02596 16 300 WRKY Transcription Factor Family AT4G12020 25.926 1.63e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02596 - - gmx:121172685 382.489