Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02562 atgTCAAGTCGAGGCGGAAGGGATCGGTCCAGGAGGGATTATCCTTCAAGATACGAAGACAATAAGGGTAACAGTGGTATGGGGCGCGGTAACGGTGGTAGCAGCGGCAACCCTCCTTCTAGGCACCTTTGGGTTGGGAATCTATCACACAGTATTGTAGAGGATGAACTTGCGCATCCTTTTATACGATTTGGACCACTGGAAAAAGTTGCATTTCAACCCGGTCGAAGTTATGCTTTCATCAACTTTGAAGTGGATGAAGATGCCATTGATGCTATGAGATCACTGCAAGGTTTTCCTCTTGCCGGCAATCCGCTTAGAATCGAGTTTGCAAAGGCGGACAAGCCATCAACAGTAACACGTGATGAGGATTATTCACGTGATGAACGAAGACCAGCATTAAGGGGATCTCCTTTCTCTCAAAGAGAGATCAGAGGACGTCATGGTAGCCCTGAACCACAGTATTATGACAAATCCAAATTAAGTGATAAGAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCGGCTCAGTTGAAAGTGGATGAATTAATTTTGGGAAGGGCTTTTTCTCCATTTGGTGAGATTGAGAAGATTTCGACATTTCCAGGTCGTAGTTATGCGTTTGTTCGCTATAGAAATCAGGCTTCAGCATGCAGAGCAATGGATGCTCTGAAGGGAAAGTTATTTGGGAATCCCCGTGTTCATATTTGTTTTGCCAAGAGTGAATCAGGTTCAAGCAGTGGGAAGAGCTCATTTAATGGCCCTCGATCCCCATCATACAAGTCAAGTGGTCATGGTGGATCTTCCGAGAACTTCAGGCAGGATAGGAGCTTTGGCGGGGAGCAGAACATTAGTTCTCCGAATATGTTCGTGAATTGGGATTCTCGAGATGCTTATGATTTCAACAACAGGGGTTCTTCATGGGCTGGTGGAGCTAACACATATGAGCAAAGGAAAGTTGGAGAGAAGGGCACTCCACTCGGAGTACCACAAGAATTTTATGAACATATAAATAGTCCATCAAGAGAAAGACACTTTCATCAGGGTGATTTTCCACAGAAATATCCTCAAAGGGGTGCATTCTTTGAAGATCTGCAGGGCTTGCCTGAAGATGCTCCCTATCTACATGTGGCTAAAAAGCTAAAGAGTGATTCTTCTCCTCCTGAGAGGGAGCTTCCAGAGTATGCTTTCTCTGAGTTAGAAAGACAAAAACATGTTTTCCCGAGATTATTACCCGATTTTCCTCATCATGAGCCTTTTGATAAAAGCTTTGATGCTGGAAATTTCACTTACGGACAAACATTTAATCATCCACCAAGTTCTCCTCTGGTTCGCATAGATAGACATGAAGGTCGGAAACCTTATGATAGTTTCCAAATGGGTCCTGGTGCTCTCCAATCaaattttgttgagaaaaacatatttacacCTGAACCTGATAATTCATCTTCATCTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGCGGGACCCCTATTTGTCGTGCCCGCTGCTTCCCTGTAGGGAAAGTCCTAGATATCGCATTACCAGAATTCTTAGATTGCACTGCAAGAACGAGTCTAGACATGCTGTCCAAGCATTACTACCAAGCAGTTGGAGTTTGGGTTGTTTTCTTTGTGCCGGGAAGTGATGCTGACATTGAATTCTACAGTGAGTTTATGCATTACCTGGAGGAAAAGCAGCGTGCTGCAGTTTCCAAGGTGGATGACAAGACCACCTTATTTCTCGTACCTCCATCAGATTTCTCAGAGAAAGTGTTAAAGGTACCTGGTAAGTTGAGCATATCTGGTGTTATTCTAAGGTTGGAATATCCTGGTTTAAACCAAGGTCCTATGCACATTGaaagagaaatgaaaaatgaaaacctGTCGTCCTATAATGAGAACATATCGTATCCAAAGTCATCTTATCCATCCGTAGGCATACCTAAAAACCCACCATCTATTTCAGAATTGGGTAATTCTGGTATTAGCAATCTTTCATTTCCGGGAAACAAATTTGAAGCAGCTCCGTTAGTTTCTGATTCAGCTCGTTCTGTGGTTGGCATGCCTGAGTCTTATGATGAAAGAAGTCGTTACTATCCTTCCATCCAGCCACGGACATCTGTACCAAACTGGCCTTCTCAAAAACCACAAAATTTAATCTCTAATAGAACTTTACCTTCACATCAATTCAGTGGTGCTGTTGAACCTATTGCTGAGGAGCGTCATCCCATCATGAATCTAAGTTCAACTCAACATTTCGGTGGAAATTCTGGTAATCCATTTGGCGGTAATAACATGTCATCATATCCAGAAATTAGAAATTTCGATCCTTCAACCCCTGTGGGAGCCCTGCAGCCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAGAAGCAGAGGCAATTAGGAAGCTCTATGAACACATCTGCAATGAGTGATCCAAGACAGAAAAGATTTAATGAGTCTGAAACCTCATCCAGACAATCATATGCTGCAGAAAACAACCCGGCAAGTTCTGAACACTCGACATCTCAGTTTGGTCACGTTCTACAGTTGCAAAAGCAACATCATATGATGCCAAATGTGCCTCAGTTGTCACATATGGTTCAAAGAGAACCACAAAGAGAGGTCAATGGAAATCAGCAGTTAGCAGATAATAGCTTGCAGGAAGGGGGAGACGCAGATACACAGAAACGTTTAGAAGCAACCCTAAAGCTGGCTGCTACTCTTCTTCAGCAAGTCCATCAAGGAAACGGGAATTGA 2778 0.4287 MSSRGGRDRSRRDYPSRYEDNKGNSGMGRGNGGSSGNPPSRHLWVGNLSHSIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFPLAGNPLRIEFAKADKPSTVTRDEDYSRDERRPALRGSPFSQREIRGRHGSPEPQYYDKSKLSDKNPEPSEVLWIGFPAQLKVDELILGRAFSPFGEIEKISTFPGRSYAFVRYRNQASACRAMDALKGKLFGNPRVHICFAKSESGSSSGKSSFNGPRSPSYKSSGHGGSSENFRQDRSFGGEQNISSPNMFVNWDSRDAYDFNNRGSSWAGGANTYEQRKVGEKGTPLGVPQEFYEHINSPSRERHFHQGDFPQKYPQRGAFFEDLQGLPEDAPYLHVAKKLKSDSSPPERELPEYAFSELERQKHVFPRLLPDFPHHEPFDKSFDAGNFTYGQTFNHPPSSPLVRIDRHEGRKPYDSFQMGPGALQSNFVEKNIFTPEPDNSSSSEWKWEGTIAKGGTPICRARCFPVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYSEFMHYLEEKQRAAVSKVDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEYPGLNQGPMHIEREMKNENLSSYNENISYPKSSYPSVGIPKNPPSISELGNSGISNLSFPGNKFEAAPLVSDSARSVVGMPESYDERSRYYPSIQPRTSVPNWPSQKPQNLISNRTLPSHQFSGAVEPIAEERHPIMNLSSTQHFGGNSGNPFGGNNMSSYPEIRNFDPSTPVGALQPEQLAQLAASLLEKQRQLGSSMNTSAMSDPRQKRFNESETSSRQSYAAENNPASSEHSTSQFGHVLQLQKQHHMMPNVPQLSHMVQREPQREVNGNQQLADNSLQEGGDADTQKRLEATLKLAATLLQQVHQGNGN 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02562 925 MobiDBLite consensus disorder prediction 113 164 - -
Tsu03g02562 925 PANTHER RNA-BINDING PROTEIN SPENITO 11 915 - -
Tsu03g02562 925 MobiDBLite consensus disorder prediction 828 856 - -
Tsu03g02562 925 MobiDBLite consensus disorder prediction 243 287 - -
Tsu03g02562 925 MobiDBLite consensus disorder prediction 1 42 - -
Tsu03g02562 925 PANTHER RNA RECOGNITION MOTIF-CONTAINING 11 915 - -
Tsu03g02562 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 113 IPR000504 GO:0003723
Tsu03g02562 925 SUPERFAMILY RNA-binding domain, RBD 29 122 IPR035979 GO:0003676
Tsu03g02562 925 SMART rrm1_1 42 109 IPR000504 GO:0003723
Tsu03g02562 925 SMART rrm1_1 171 239 IPR000504 GO:0003723
Tsu03g02562 925 MobiDBLite consensus disorder prediction 114 164 - -
Tsu03g02562 925 Pfam SPOC domain 484 599 IPR012921 -
Tsu03g02562 925 SUPERFAMILY RNA-binding domain, RBD 181 269 IPR035979 GO:0003676
Tsu03g02562 925 MobiDBLite consensus disorder prediction 808 859 - -
Tsu03g02562 925 MobiDBLite consensus disorder prediction 1 19 - -
Tsu03g02562 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 235 IPR000504 GO:0003723
Tsu03g02562 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 106 IPR000504 GO:0003723
Tsu03g02562 925 Gene3D - 30 120 IPR012677 -
Tsu03g02562 925 MobiDBLite consensus disorder prediction 753 778 - -
Tsu03g02562 925 MobiDBLite consensus disorder prediction 27 42 - -
Tsu03g02562 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 243 IPR000504 GO:0003723
Tsu03g02562 925 Gene3D - 156 252 IPR012677 -
Tsu03g02562 925 MobiDBLite consensus disorder prediction 753 786 - -
Tsu03g02562 925 CDD RRM3_Spen 43 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02562 Tsu-Chr3 31420609 31432999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02562 37 267 Eukaryotic Initiation Factors Gene Family AT1G22760 27.273 1.67e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02562 - - gmx:100816831 1214.91