Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02555 ATGACAAACACACTTTTCACTTTGGTtttatttctcttctctcttttcaTGCCTACCCTCATTTCCTCTTCACCTCTTCAAAACCCTGAATTGGTAGTCCAAGAAGTAAACAGGAAAATCAATGCCTCTTTAGCAAGGAGGAACTTAGGATACCTTTCTTGTGGGAGTGGAAATCCCATTGATGATTGCTGGAGGTGTGATTCCAATTGGGAGAAGAACAGACAAAGGCTAGCAGATTGTGCAATTGGGTTTGGAAAGAACGCCATTGGTGGAAGAGACGGTAAAATCTACATTGTAAATGATGCCAACGATGACAATCCGGTGAACCCAAAGCCGGGAACACTCCGTCACGCTGTGATCCAAAACGAACCATTATGGATAATCTTCGCCAGAGACATGGTGATCAAGTTAAAAGAAGAATTAATCATGAATTCTTTCAAAACAATTGACGGTAGAGGCGCAAGTGTGCACATTGCTGGTGGTCCATGCATTACCATACAATTTGTCACCAATGTTATAATTCATggaataaatatatatgattgtaaACAAGGTGGAAATGCTATGGTGCGGGATTCACCGCGACATTTCGGGTGGAGGACTATATCGGACGGTGATGGTGTGTCTATTTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTGTCTAATTGTAAAGATGGTTTGATTGATGCTATTCATGGATCAACGGCTATAACAATCTCTAATAATTACATGACACACCATGATAAAGTCATGTTGTTGGGTCATAGTGATTCTTATACTCAAGATAAGAATATGCAAGTCACAATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTAGTGAACAATGACTACACTCACTGGGAAATGTATGCTATCGGAGGAAGTGCTAATCCAACCATTAACAGTCAAGGAAACAGATTTGTTGCTCCTAATAACAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCAGCAGAGAGTAAATGGAAGCATTGGAATTGGAGATCAGAAGGTGACTTAATGGTAAATGGTGCATTTTTCACTGCATCAGGTGGTGGAGCATCATCTAGCTATGCAAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTCGGTTCCATAACAATAGCAGCTGGTACACTTAATTGTAAGAAAGGTTCTCCTTGCTAG 1221 0.3964 MTNTLFTLVLFLFSLFMPTLISSSPLQNPELVVQEVNRKINASLARRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAIGGRDGKIYIVNDANDDNPVNPKPGTLRHAVIQNEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNVIIHGINIYDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNNRFSKEVTKYEDAAESKWKHWNWRSEGDLMVNGAFFTASGGGASSSYARASSLSARPSSLVGSITIAAGTLNCKKGSPC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02555 406 SUPERFAMILY Pectin lyase-like 36 382 IPR011050 -
Tsu03g02555 406 PANTHER PECTATE LYASE 4 403 - -
Tsu03g02555 406 Pfam Pectate lyase 140 323 IPR002022 -
Tsu03g02555 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Tsu03g02555 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Tsu03g02555 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Tsu03g02555 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Tsu03g02555 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Tsu03g02555 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Tsu03g02555 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Tsu03g02555 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Tsu03g02555 406 SMART amb_all 132 329 IPR002022 -
Tsu03g02555 406 Gene3D - 57 399 IPR012334 -
Tsu03g02555 406 PANTHER PECTATE LYASE 18-RELATED 4 403 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02555 Tsu-Chr3 30949279 30952010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02555 6 406 Polysaccharide Lyase AT5G63180 78.412 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02555 K01728 - gmx:100101868 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02544 04 28668685 28670236 Tsu03g02555 03 30949279 30952010 ECH
Tsu01g04930 01 56219827 56226327 Tsu03g02555 03 30949279 30952010 ECH
Tsu03g02555 03 30949279 30952010 Tsu03g02555 03 30949279 30952010 ECH
Tsu04g02544 04 28668685 28670236 Tsu03g02555 03 30949279 30952010 PCT