Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02550 ATGATGGATGTACGGCGACATTCTGTTGATATACCGATTTCTAAGGCTCTTGTAGCATTAAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATTCTATTATCAAACATTCTCCTTTGATTGACAATTTACATTGGGAAAATGGTTCCGGCAATGGGATTTCTCTGATGTTTCCTGATGATGTTCATGCTTTTGATTCTGATGATAACCTTGCCTTCAGATCAAGGAATTTATGTTTTAAGGGTCAAAGAGAGCTGAATGCTGCTGGTTTTGAATCGAATCATGGTATGTTGAATTCAAGGCTGAACCAACGAAGTGTTTATGGAAACAAATCACCTAGTGAAAGCTGTGGTAGCAACCATGGTGGTAGAGGATTGGATATTGATGATTTCAAGGATGAGGAATTGTGCTATAGAAAAACTAGAAAATCGTCTAAATTAGGTAGAATAGATCATATTAAGTCGGCGAAAAAGAAGCTATGCAAGAATCAAGTTAAACCGTCTGTTGTGGTGGGAGATATTGCTAGCCATTTGAGTAGTCCATGTCTTTCTTCTCGTGATGCTTTATCGCCCGATGGTTCCTCAGAGCATATAAATCAAGATTTCGGTGTTCTAAATAATAGTGATAATGCATGTGGAATAAGTTGTGGTTGGTCAAAACCACCAAGATTTAGAGAATCAAATCTTTATTGTGAGAAAGAAGACCGTCCCTTGATATTAAACGGCGCTGATGGCACGTATCTTCACGGTCATAGAAATGTGAGACACAATGGTGGTGAAATTAGTCCAAATTTGGAAACTCCTCAAATGTTATCCATGAAATTCAGGCCTAAATCATTTCGTGATTTGGTGGGACAAGATGTGGTAGTTAGGTCTCTTTTGAATGCAATATTTAGTGGAAGGATAACATCATTTTATCTCTTCCATGGTCCACGCGGTACTGGCAAGACATCTGCTTCTAGAATATTTGCTTCTGCTCTGAACTGCCTCTCTGTTGAGGAGCAAAAACCATGTGGCTTGTGTAGAGAAtgtgctttatttttttctggAAGAAGTAAAGATGTTAAGGTGGTGGATTCTGTGAGAATCAATCATACAGACCAGGTTAAATCCCTCGTCAAGAATGCATGTACACCTCCAATTTCCTCGCGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTATTGAACGAGGAGACATGGGCCTGCCTTTCAAATAACCTAGAGAACATTTCTCAACATGCGGTTTTTGTGATGATCACTCCTGATTTGGATAACCTTCCTCAAAGTGCAGTTTCCCGGGCACAGAGGTATTACTTTCCAAAGGTTAAAGACGCTGATATTGCATGCAGATTAGAAACAATTTGTGCAGAAGAAGGTCTTGATTATGAACAAGATGCTTTGGACCTTATTGCCGTAAAATCCTGTGGTTCTGTCAGGGATGCAGAAATTATGCTTGATCAGCTGAGTTTGCTCGGTAAAAAGATCAAAATTTCCTTTGTTTACGAACTTACTGGGATTGTTTCCGATGCTGAATTGCTTGATTTGCTGGATCTGGCGATGTCCCCAGACACTACAAATACAGTTATAAGAGCCCGTGAGCTGATGAGATCGAGGATAGATCCTTTGCAACTTGTGTCACAGTTGGCAAATCTCATAATGGACATCCTTGCAGGAAAATGTGATTATGAAGCCAGAAGTAGACTTTTTAGTAGATATACTTTGGAAGCAGACCATCAGAAACTAAGTCATGCATTGAGAATACTTTCTGAAGCCGAGAAACAATTAcgaatttcaaaaaatcaaacaacatgGTTCACTGTAGCTCTTCTACAGTTAAGCTCTATTGACTATCCTTCCACCAATGCAGATGGTACCAAGTTGTTTCTGAGAAGTACATGCAATGGAGGGCAGAGCATGGAACATCTTGCTACAGGTGGTTGTGAAAACAAGTCATTTAGATTAGTGGCGCACGAGGATCACGAAGGAACACTGGATTCCATATGGTATCATGCTACTGGGATATGTCAATCTAGGCAACTCAAAACTTTTCTCAGGAAGAAGGGAAAGTTGTCTTTTCTACATGTTGATCAATCTAAATCCTGTCTTGCAATAGCGGAGTTGGAATTCGGCCATCGCCGCCATGTATCCAAGGCTGAGAAGTCATGGAAATTGATTGCAAGTTCCTTGCAAAGCATATTGGGTTGTAACATTGAGCTGAGAATCACTTATGTACCTCATACTTCTAATTCACCGAAGAGGTTATCTTTCAACATCTTTAGTTGTTCACGCAAAGTACGACAGAAACCATTGTCGTCCAATGATCAAGAAAGTGAAATAGACTGTGCTTGTTACACTTCTGAAAATCCCATGATGAAGAATAAAACTCTATCTTCTTCTGCTGACTGGGGATCTCGGGTGCGACCATCGAAGTCTTACAACGGAATGGATATTGTAACAACATTGAGGAGTTGTGAAGGGAACTTGCTCAGCTCAAGAGAAAGATTTTTGAATCGGTCTCTTCAAGAAAATATGGATGCATCATGTTCTAGAGTTGATTCTTACAATGAAGAGGGACACATTTGTGCACATTTAGTTCCATCAATCATCAACTCAGATAATCAGTCTAACTGTTTTCCTCAAACTCTCTGGCTTCAAAAGAAGTTCCGATCACCAAATTCATCCAGGTTGTCTTTTCAGGGTATCTAA 2709 0.3928 MMDVRRHSVDIPISKALVALRRVRSLRDPSTNSIIKHSPLIDNLHWENGSGNGISLMFPDDVHAFDSDDNLAFRSRNLCFKGQRELNAAGFESNHGMLNSRLNQRSVYGNKSPSESCGSNHGGRGLDIDDFKDEELCYRKTRKSSKLGRIDHIKSAKKKLCKNQVKPSVVVGDIASHLSSPCLSSRDALSPDGSSEHINQDFGVLNNSDNACGISCGWSKPPRFRESNLYCEKEDRPLILNGADGTYLHGHRNVRHNGGEISPNLETPQMLSMKFRPKSFRDLVGQDVVVRSLLNAIFSGRITSFYLFHGPRGTGKTSASRIFASALNCLSVEEQKPCGLCRECALFFSGRSKDVKVVDSVRINHTDQVKSLVKNACTPPISSRFKVFIIDECQLLNEETWACLSNNLENISQHAVFVMITPDLDNLPQSAVSRAQRYYFPKVKDADIACRLETICAEEGLDYEQDALDLIAVKSCGSVRDAEIMLDQLSLLGKKIKISFVYELTGIVSDAELLDLLDLAMSPDTTNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCDYEARSRLFSRYTLEADHQKLSHALRILSEAEKQLRISKNQTTWFTVALLQLSSIDYPSTNADGTKLFLRSTCNGGQSMEHLATGGCENKSFRLVAHEDHEGTLDSIWYHATGICQSRQLKTFLRKKGKLSFLHVDQSKSCLAIAELEFGHRRHVSKAEKSWKLIASSLQSILGCNIELRITYVPHTSNSPKRLSFNIFSCSRKVRQKPLSSNDQESEIDCACYTSENPMMKNKTLSSSADWGSRVRPSKSYNGMDIVTTLRSCEGNLLSSRERFLNRSLQENMDASCSRVDSYNEEGHICAHLVPSIINSDNQSNCFPQTLWLQKKFRSPNSSRLSFQGI 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02550 902 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 100 878 - -
Tsu03g02550 902 CDD HLD_clamp_pol_III_gamma_tau 443 506 IPR045085 -
Tsu03g02550 902 SUPERFAMILY post-AAA+ oligomerization domain-like 507 614 IPR008921 GO:0003677|GO:0006260
Tsu03g02550 902 Pfam DNA polymerase III, delta subunit 286 443 - -
Tsu03g02550 902 Coils Coil 838 858 - -
Tsu03g02550 902 CDD AAA 284 423 - -
Tsu03g02550 902 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 269 613 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Tsu03g02550 902 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 100 878 - -
Tsu03g02550 902 Gene3D - 263 441 IPR027417 -
Tsu03g02550 902 Gene3D - 444 506 - -
Tsu03g02550 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 492 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02550 Tsu-Chr3 30819988 30823336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02550 261 508 Core DNA Replication Machinery Family AT1G21690 26.984 7.01e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02550 - - gmx:100819111 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02550 03 30819988 30823336 Tsu03g02550 03 30819988 30823336 ECH
Tsu04g02540 04 28606420 28617921 Tsu03g02550 03 30819988 30823336 PCT