Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02537 ATGGAGACACTGTTTTGGAAAGCGACGGTTGATAAACCTTTTTCAGTTGAATATGCAAATGATATGCCTGGTTCTGCATTTTCGATGTCGTCGTCCAAATGTCGTCATGTCGGTGAGGctaattcggttgctcatagtGCTTGGAATATGAGAGGGGTTTCAAGGGCAAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAAATTCCTGGGGTTACTTCACCTATGGTTTATCTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTTGAAGATCATGATCTTCATAGTTTGAATTATCTTCATATGGGTGCTTCCAAGACTTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACAttttcgattcttggtgagaaaACCACAGTGATGTCACCAGAAGTGTTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGCTCAAGAGTCCCTGGGGGAATCAGTGCGGGGCCACGGAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGACTCTGTAGTTAAAGAACTATTTGTCCAGGACGTGTTACGAAACAATGATCTGCTTCATGCACTTGGAAAAGAATCTTCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCAAAATTACGTGTCGGATGTCAGCAACAAAAAGTGAACCCTGGATTTTCCATTAATGTATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAATTGCGGAATCGTCCAAGAAAAAAATTCCCATTCTATGAAAGACGAGTTTAATCTGTTGTGCGAAGGGAAGGGGATTTTCCCATTTGATGCAAACGGTAACACATCCCCTTCAAGTTCCAAGAAGCTTCATAGAGGCAACGAAAATGAAACTAGTCAAGGAGATACGTTGTCAGATCAGAGACTGTTTTCGTGTGTCACATGTGGGCTATTAAACTTTTCATGTGTTGCTATTGTACGTCCTAGCGAACCAGCAGCACGATATCTTATGTCTGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTACCTAGCAATAAATCTACTGTTGCCGGTGAAGATGAAAATATTCCTGGGCCAAATATTCATACAGAGTGGACAAAGGAAAATGCCCAAGTAGAGGCTTTAAATACTGAAGAAGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCCGAGGAAGATGCAGTTGACGATCATGAATCAAATACAATAAACTCTACATCAGATAATTTGCCTTCTAATGTTCAGGTTTCCCATGATAATCCCATGACTAGGCATGATAAAGATGATATTCTTTCAGAGAGTGCCAGTTACGAAGCACACAGATTTGAGGGTAATTTGAGTCAGCCTTGTGACCAATCTTTGGAGGATCAGGATTATAAAATCACTTCAGGAGTTGCATTTGAAAATACAAGGCGATTGCCTTATTCCACCACATATAGTTCCCAAGATGCTAATAATGCTGAAAAATCACTGTCAGCCGAAGCCATGGTTGCTGTCAATCATAAAAATGCTTTATTGGTACCGCAATGTGATGAAGACTCATCTAGAATCCATGTATTCTGCCTAGAGCATGCTGTAGATGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCTTGTGCCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTGACTACAGGCATGGTACCAAAGAGGATGAGGAGAGGATCCAGTTAGCTGTGGATAGTGAGGAAGCGATTCCCGGGAATGGGGACTGGGCTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCCCTTTATAGCAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGTCGTAGCTCTCAAGCAAGCTCACCCATAGAACCAAAGGTCTATCAGAGAAGGTCTGACAAGCATAAAAAGGTAGTTGCTGGCAAATGGTGCGGTAAAGTTTGGATGTCTAATCAGGTCCATCCCCTTTTAGCAAAAAGGGATTCTGCAGATGTTGAGGATGAGAAAAGTTTACATGGATTGGTATTGCCTAATGTGAAAATTGAGGCATCTGGAAGTACCCCAAAAACTGAAACTGCTAATACAAAATCGGGTAGAAAAAGGAAAACGACCTTAGGCAGTAGACGAACCAGGAGAGGAGGATCTGTTAAAAAAGATGTGGTTTTAGATAATTCCGCTGAAGATAAACCCAATCCTCGGCCACGGAGGATTCTTAAGCAAGCTAGGGGTGTTGAGAAAGTTGGTGCAGCTGAAAGTGATGTAGTTTCCGATGATTCGCTTGATGATGATTATCGCATGCGACGTATGAGTTTTAATGTCAAAAAAGCTAAACTTATTGACAATGATGCGGTTTCACATGATGCAGTGGACTATGATTCTGATTGTCATCAGATGAGAGAACTTAAAAGCAAGCAAGTTGAATATACAGAGAGAGGCTCAATTTCAGAGGATTCTTTGGATGTTGGTTCACTTAAACACAGAAAGACTTCTAGAAACAAGCATGCCAACTGcataattgaagaaaatgcaatTTCTGATGACCAAATGGAGAATGGTTGTCTGATGCAGCACAAGAGAATTCCTAAAAGCAGGCAAGGCAAATCCATTGCTGAAAAAGATTCAGTGATATCAGATTACCAACTGGCGCTGAACATGCAGAAGCAGCGGCGGAGTAATTCTAGAAGTAGGAAAGCCAAATACCTCACCGAAGAGGATAGTGTATCAGATAACCAAACAAATGTATATTGTCGCAAGTACCAAAGAAGGACAGTTAAAGTCAGGCAAGCCAGATGTCTAGCAGCGGAAGATTTAATGTCTGATGACCAATTGGAGGATCCCTTTCTAAACCAGAAACCAAGTATTTCTAGAAGGAAAAACAAAGGCATCTATCGAGAAGTTAAAACTGAAATGTCTGATGACCAACTGGATGATCACTTTCAAAAGCAGCAGAAAAAAATTCCTAAGGGCAGGAGGCACACCAAACAGACTGATGAAGAAGTTATTGATGAATCGGCTGAAGATGATATGAGTTTAAATAACGAAATGGAAGATGATTCTCTTCAGCAGTACAAGAGAACTCATCCAACTAAACAATCCAAACCAAAGACACTTAGACAAATGAAGCAATCCAAATCCCTCCAGATAAAAAACGAGACACTTAATCCAGTGAAACGAGGGGTTGGGCTGCAGATGAAATCAAAGGCTGCTCAGCAAGTAAAGCAGCCTTCTCGTTTGAGGAGTAAACAATCTGGTAGCTCCAGAGAGCCTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGAGTCCAAAAAGCTCAGGAGTCTGAAGTAAAATCAGAAGACAAGCAAACCAAAAGGAAAAGGGCAAAGGATGTTACAGCTACAAAGGTTTCAGCTCACGATCCCAAAACAGAGGACGAGGAAGCAGAATATCAGTGTGACATTGAGGGATGCACCATGAGTTTTGAATCAAAACAAGAATTGTTGCACCATAAGAGAAATGTCTGTCCAGTAAAAGGCTGCGGAAAAAAGTTTTTCTCACACAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGCCCCCTGAAATGCCCCTGGAAGGGGTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACTGAGCATATTCGAGTCCACACTGGTGCACGTCCTTATGCATGTGCTGAGCCAGATTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGGCATTTAGCAAAGAAGATTCGTCAATAG 4203 0.413 METLFWKATVDKPFSVEYANDMPGSAFSMSSSKCRHVGEANSVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRVPGGISAGPRSSRLKDKKKGEGDSVVKELFVQDVLRNNDLLHALGKESSVVLLPRSSVDISICSKLRVGCQQQKVNPGFSINVCNSEGMNSSKGFVSDDLVFNRNCGIVQEKNSHSMKDEFNLLCEGKGIFPFDANGNTSPSSSKKLHRGNENETSQGDTLSDQRLFSCVTCGLLNFSCVAIVRPSEPAARYLMSADCSFFNDWVVGSGVPSNKSTVAGEDENIPGPNIHTEWTKENAQVEALNTEEENGNTALALLASAYGNSSDSEEDAVDDHESNTINSTSDNLPSNVQVSHDNPMTRHDKDDILSESASYEAHRFEGNLSQPCDQSLEDQDYKITSGVAFENTRRLPYSTTYSSQDANNAEKSLSAEAMVAVNHKNALLVPQCDEDSSRIHVFCLEHAVDAEQQLRPIGGAHILLLCHPDYPKIEAEAKLVAEDLGIDYMWKNIDYRHGTKEDEERIQLAVDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSQASSPIEPKVYQRRSDKHKKVVAGKWCGKVWMSNQVHPLLAKRDSADVEDEKSLHGLVLPNVKIEASGSTPKTETANTKSGRKRKTTLGSRRTRRGGSVKKDVVLDNSAEDKPNPRPRRILKQARGVEKVGAAESDVVSDDSLDDDYRMRRMSFNVKKAKLIDNDAVSHDAVDYDSDCHQMRELKSKQVEYTERGSISEDSLDVGSLKHRKTSRNKHANCIIEENAISDDQMENGCLMQHKRIPKSRQGKSIAEKDSVISDYQLALNMQKQRRSNSRSRKAKYLTEEDSVSDNQTNVYCRKYQRRTVKVRQARCLAAEDLMSDDQLEDPFLNQKPSISRRKNKGIYREVKTEMSDDQLDDHFQKQQKKIPKGRRHTKQTDEEVIDESAEDDMSLNNEMEDDSLQQYKRTHPTKQSKPKTLRQMKQSKSLQIKNETLNPVKRGVGLQMKSKAAQQVKQPSRLRSKQSGSSREPSLDMEEEEEGGPSTRLRKRVQKAQESEVKSEDKQTKRKRAKDVTATKVSAHDPKTEDEEAEYQCDIEGCTMSFESKQELLHHKRNVCPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYACAEPDCGQTFRFVSDFSRHKRKTGHLAKKIRQ 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02537 1400 ProSitePatterns Zinc finger C2H2 type domain signature. 1339 1361 IPR013087 -
Tsu03g02537 1400 Gene3D Classic Zinc Finger 1305 1391 - -
Tsu03g02537 1400 SUPERFAMILY beta-beta-alpha zinc fingers 1355 1389 IPR036236 -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 1200 1220 - -
Tsu03g02537 1400 ProSiteProfiles JmjC domain profile. 42 211 IPR003347 -
Tsu03g02537 1400 SMART c2h2final6 1284 1306 IPR013087 -
Tsu03g02537 1400 SMART c2h2final6 1307 1331 IPR013087 -
Tsu03g02537 1400 SMART c2h2final6 1337 1361 IPR013087 -
Tsu03g02537 1400 SMART c2h2final6 1367 1393 IPR013087 -
Tsu03g02537 1400 ProSitePatterns Zinc finger C2H2 type domain signature. 1309 1331 IPR013087 -
Tsu03g02537 1400 SMART cupin_9 42 211 IPR003347 -
Tsu03g02537 1400 ProSiteProfiles Zinc finger C2H2 type domain profile. 1337 1366 IPR013087 -
Tsu03g02537 1400 SUPERFAMILY beta-beta-alpha zinc fingers 1323 1365 IPR036236 -
Tsu03g02537 1400 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1064 1390 - -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 512 531 - -
Tsu03g02537 1400 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 979 - -
Tsu03g02537 1400 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1064 1390 - -
Tsu03g02537 1400 Pfam JmjC domain, hydroxylase 75 193 IPR003347 -
Tsu03g02537 1400 ProSiteProfiles Zinc finger C2H2 type domain profile. 1367 1398 IPR013087 -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 1168 1185 - -
Tsu03g02537 1400 ProSitePatterns Zinc finger C2H2 type domain signature. 1369 1393 IPR013087 -
Tsu03g02537 1400 Gene3D Cupin 1 215 - -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 845 869 - -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 1230 1276 - -
Tsu03g02537 1400 SUPERFAMILY Clavaminate synthase-like 57 225 - -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 498 539 - -
Tsu03g02537 1400 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1 979 - -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 1103 1276 - -
Tsu03g02537 1400 ProSiteProfiles Zinc finger C2H2 type domain profile. 1307 1336 IPR013087 -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 1133 1147 - -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 815 869 - -
Tsu03g02537 1400 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02537 Tsu-Chr3 30472081 30480999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02537 202 861 C2H2 Transcription Factor Family AT3G48430 43.045 1.09e-150 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu03g02537 JmjC 8.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02537 - - mtr:MTR_3g075210 2155.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02537 03 30472081 30480999 Tsu03g02537 03 30472081 30480999 ECH