Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02529 ATGGCCTTGATGAATGGTAATGTTAACCTTTTTTCAACTATTGAAGAAATTAATTCTGACAAAGCTTCTTGGTCTTTTAAGGCTAAAATTCTAAGATTATGGCAAGTTTCTGATTTGAATCGAAATAACATTCCTTTTTCTATCGAAATGGTGCTTATGGACACTGACGGTGGAAGAATCCATGCAACTATTAAGAAAACCTTGATTTATAAGTTTAAGGATGAGTTAGAACAAGGAAAagtatatagttttgaaaatttggGAGTTTCAGCTAACAGTGGAGCTTATCGGACAACCCAACACTGTTATAAGTTGAACTTCCAGTTTACATCTGTGGTTCAGAGGCTTAATAACCATGAAGTTGTCAAGTCTCCATTTGCCTTAGTTCCTATTGCTGATGTCGTAGGTGGTTCCTATGATACGGATTATTTACTGGATGTTATTGGCGTGTTGACAGGGGTAGGATCAGAACGTGAAATAACCAACCAAAATGGAACCACCACGAAGCTCAATGTCATTGAATTAGAGGCTGCAGGGCACAAACTTCAGTGCACTCTCTTTGGACCCTATGTTGATGAACTTAATACTTTTATTGCTGCTGGGGATTACTCCAATGCTGTTGTTATTGTTCAACTTGCAAAGGCTAAGACATTTCAAGACAAGCTACATATTCAGAACTGCATGAACTGTACCAGGCTGTTTTTTAATCCAAATTGTGAGGAAAGTAGAGTCTTGAGGGAAAGCCTGCCTGTAAGTATTGAGAGTCCTTCTCCAATTACTCTTACTCAAATCCAAGCTGAACCTGCAGTAAGACCCGTGGAGGAGTTTCTGTTCAACACACCAAGAACCACTTTGCAAGGATTAAAAGATGCCACTACCGAATCCATTCATGTTGTGTGTGTTACTGTCAAGAGGGTTTTGAACCCAGATTGCTGGTGGTATACTGCTTGCGTTTGTAACAAATCTGTGATCCCAGACTCTAACATGTTTTATTGCGAAAAATGCAATAAACATGTGTCAAAGGTTTTCCCAAGGTATTGTCTGAAGATTAGGGTTATGGATCAGACTGATCATGCCACTTTTGTTATATTTGATAAAGATGCAAGCTCATTGTTCAACATGAGTTGTGCTGATATGTTTGAGTCAAATCAGAGGCTTGGTGGTGTTGGAGTGGTTCCACCTCAGATTGGAATGTTGGCTGATAAGAATTGGTTGTTTAAGGTTGAAACTAAACCTACAAGTAATCCTAGATTTGAACAAACTTTTAGGGTGAGGAAAATATGTACTGATATTCAAATTATCAAACAATTCAAAGAGAAATGGGACAATGAGGAAGCGTCAATTAGCAAAAATAACAATGAGGCTGGGTCGTTAAGTACTTTGTTGGAGAAAGGAAAAGATGTCTTAGCTGCTTCTTCTACCAACATCTTATCAGAGGATTTATTTACATTGACTGGAAGTAGTAGCAAAGAGAAAGGAAAGGAGATTGTTGTTGATTGTACTCCTGTTGAATTCAGTCAGGATCTAATGAACAAATTTTCTGATACTGTTGTCAACCTTGATGATGATTCTATTGGTACTCAAGAGATAGATAGATCCCTGATATCTTCAAAgGTTACACATTCATTGACTGCAAGGAGTGACAAAGGGAAGGCCAAAgatgttgttgatgatggtgcACCTGTTGGAGGTATTGATAGTGATAATATGGTGAAAAAGCGTGAAACTGTTGTAACAAAGGGGGCTGGTGAAACTTTGAAGTCTGCTGAATCTGTTATCACTCCAAAGGGAGCTAAGTCCAATAAGGAATTACATGGTGTATCTGTTGTTGATGCTGACTTCATTGAATCTCAGCAAGATATGGTTACTCCAAACCAACTTGCTGCCAATGAATCTAAAGTTGCAAAGAGCAAGAAGTTAGTCAAGAGAGTTTCTCCTCAAAAGGAAGAGGATGCTGAAGATGACAATGCACCAATCAAGCTTTTGAAAAGGGCAGTGAAAATTGAGAAGATTGTTTAG 2019 0.3759 MALMNGNVNLFSTIEEINSDKASWSFKAKILRLWQVSDLNRNNIPFSIEMVLMDTDGGRIHATIKKTLIYKFKDELEQGKVYSFENLGVSANSGAYRTTQHCYKLNFQFTSVVQRLNNHEVVKSPFALVPIADVVGGSYDTDYLLDVIGVLTGVGSEREITNQNGTTTKLNVIELEAAGHKLQCTLFGPYVDELNTFIAAGDYSNAVVIVQLAKAKTFQDKLHIQNCMNCTRLFFNPNCEESRVLRESLPVSIESPSPITLTQIQAEPAVRPVEEFLFNTPRTTLQGLKDATTESIHVVCVTVKRVLNPDCWWYTACVCNKSVIPDSNMFYCEKCNKHVSKVFPRYCLKIRVMDQTDHATFVIFDKDASSLFNMSCADMFESNQRLGGVGVVPPQIGMLADKNWLFKVETKPTSNPRFEQTFRVRKICTDIQIIKQFKEKWDNEEASISKNNNEAGSLSTLLEKGKDVLAASSTNILSEDLFTLTGSSSKEKGKEIVVDCTPVEFSQDLMNKFSDTVVNLDDDSIGTQEIDRSLISSKVTHSLTARSDKGKAKDVVDDGAPVGGIDSDNMVKKRETVVTKGAGETLKSAESVITPKGAKSNKELHGVSVVDADFIESQQDMVTPNQLAANESKVAKSKKLVKRVSPQKEEDAEDDNAPIKLLKRAVKIEKIV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02529 672 CDD RPA1_DBD_A_like 27 113 - -
Tsu03g02529 672 SUPERFAMILY Nucleic acid-binding proteins 12 116 IPR012340 -
Tsu03g02529 672 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 380 - -
Tsu03g02529 672 CDD RPA1_DBD_C 299 414 IPR013955 -
Tsu03g02529 672 Gene3D - 278 442 IPR012340 -
Tsu03g02529 672 Gene3D - 120 252 IPR012340 -
Tsu03g02529 672 SUPERFAMILY Nucleic acid-binding proteins 126 253 IPR012340 -
Tsu03g02529 672 PANTHER REPLICATION FACTOR A 1, RFA1 28 380 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu03g02529 672 SUPERFAMILY Nucleic acid-binding proteins 284 434 IPR012340 -
Tsu03g02529 672 CDD RPA1_DBD_B_like 146 250 - -
Tsu03g02529 672 Pfam Replication factor-A C terminal domain 305 432 IPR013955 -
Tsu03g02529 672 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Tsu03g02529 672 Gene3D - 10 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02529 Tsu-Chr3 30228521 30231611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02529 14 376 Core DNA Replication Machinery Family AT2G06510 23.622 1.51e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02529 - - mtr:MTR_4g036240 605.134