Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02527 ATGGGTCGCAATCCACAACTGTGTCTCTCTTGTCTTCACAACTGTCGATTCTTTCACTCTCACCGAACATCCACAACCTCAACCTCCCCTAACTCTTTCTACAGGCCAATCCTTCGTCAAAATGATTTCAAAGTTTTgTATCTTCCTCCAAAGTTGAATCGTATTATGTCAACCTTGATTGATAAGAAAATCAATCTCGAGGATTCAGCGGGTTGGCGAACAGTTGTTACAATATCAAAAGTTGATGGTTCTTTTGCTTTTAAGGAAGGATGGGATGTTTTCTCAAAGGAGCATGGGCTTGAAATTGGAGATATTGTGGTATTCAATTGCATTAACAAGTTGAATTTTGATGTCAAGATCTATGATGAATCTGTGtgtgaaagactagatttttctaaaaatagaAATGGGAGAAAGAGAGATCGAAGTGGTAAGTTTGTTACACAAGATCGCATAGAAAATATTTCAGAAAATGGTAATGAGGATGGAAGGGTTCGAACTATGTATACATCAGAACACATTGAAGACACATGTTACATAACAAGACATATATATCAAAATGATGATCTAGTTGTTTTTAACAACGATCCTATGTTTGAAGAAGTGTTGGGTACAGGGGATACCTCATATGCATCTAAACTTTTATTGTTGGGAAGAAACAGTTCTCTTGGTGAGACAGACAAAAGCGCATATGATGATAGTTCTGCTTTGATACATGGACAAAATAAAGAGCACAAACCCATTATGTTCGATAGCGAAGCTCAAAAGTGCCAATTTGTTGAGAGCTTAGGAAGTGCAGAGGCAGAAATATCCAAAGGCGAAAATCCCTCAAATACATTTGAACTTGAAATTTTTGGAAGAAACAATTCTCTTGCCGATTCAGACAAAGGCGCGCATGACAAGACTCCTCCTTTAaaacttgaagaaaacaaaaagggaAAATCCATCATGTCCGAAAAGGAAATTCAAGAGTGCCGGTTTGCTGAAGGCCTAGGAAGTGATTCAGCGGCCGAAGAGAGGAGCAACGAGATCAGAAATTTCCTAAATGCTGAAATTCACATTGGCGAAATGAAGGAAGTGACTATGAACATGACTCCCAAAATTGGCAGTTTCAAGGATATATTGCACGCAACAGAGTTGCCGAAGGTTATTAAAGGAGAGTTTAATCAAGATAATGACGGGCACTTTGAAACTGCTGCCACTGTCTCGTCTGTGGTGCTCACTGATAATGACTGTATGAATGCCAAACAGGAATCCAATGAGACCTCCAATCTCTTAAATGATCAAATTCACTATGGTGAAATGAAGGAAGTGCCTATGGAAATGACTCCCAAGTTGGGCAGTTTCAATGACAAATTAAATGCAACAGGGTCACCCGATGTTATTGAGGGAGAGTTTAATGAAGATGAAGCTGCGGAAACTGTCACCTGTGAAGTGCTCACTAATAATCGTTATCTTAAATTGTCAATATGCTTGTCGTTATCTCGAGCTGGACTAGGAACGAGGAGGATGGTGGTGTTCCTTAGGGATCCACTAGGGAGATTGTGGCCGGCCCTTTACCTTAGAAAAACTTGGTTGTCAAGTGGATGGTTAGATTTTCAAAGAGCAAATAATATTAAACCAGGTGATGTGTGTGTCTTTCGGGTTGTGAACAAGTATGAACGTGTCATTTCTGTACATATAAACCACAAGTGA 1695 0.3847 MGRNPQLCLSCLHNCRFFHSHRTSTTSTSPNSFYRPILRQNDFKVLYLPPKLNRIMSTLIDKKINLEDSAGWRTVVTISKVDGSFAFKEGWDVFSKEHGLEIGDIVVFNCINKLNFDVKIYDESVCERLDFSKNRNGRKRDRSGKFVTQDRIENISENGNEDGRVRTMYTSEHIEDTCYITRHIYQNDDLVVFNNDPMFEEVLGTGDTSYASKLLLLGRNSSLGETDKSAYDDSSALIHGQNKEHKPIMFDSEAQKCQFVESLGSAEAEISKGENPSNTFELEIFGRNNSLADSDKGAHDKTPPLKLEENKKGKSIMSEKEIQECRFAEGLGSDSAAEERSNEIRNFLNAEIHIGEMKEVTMNMTPKIGSFKDILHATELPKVIKGEFNQDNDGHFETAATVSSVVLTDNDCMNAKQESNETSNLLNDQIHYGEMKEVPMEMTPKLGSFNDKLNATGSPDVIEGEFNEDEAAETVTCEVLTNNRYLKLSICLSLSRAGLGTRRMVVFLRDPLGRLWPALYLRKTWLSSGWLDFQRANNIKPGDVCVFRVVNKYERVISVHINHK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02527 564 CDD B3_DNA 479 548 IPR003340 GO:0003677
Tsu03g02527 564 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 190 IPR044837 -
Tsu03g02527 564 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 502 564 IPR044837 -
Tsu03g02527 564 SUPERFAMILY DNA-binding pseudobarrel domain 488 560 IPR015300 -
Tsu03g02527 564 SUPERFAMILY DNA-binding pseudobarrel domain 28 126 IPR015300 -
Tsu03g02527 564 SMART B3_2 476 563 IPR003340 GO:0003677
Tsu03g02527 564 SMART B3_2 33 124 IPR003340 GO:0003677
Tsu03g02527 564 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS02G0598200-LIKE 10 190 - -
Tsu03g02527 564 MobiDBLite consensus disorder prediction 291 315 - -
Tsu03g02527 564 Gene3D - 467 564 IPR015300 -
Tsu03g02527 564 MobiDBLite consensus disorder prediction 293 315 - -
Tsu03g02527 564 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS02G0598200-LIKE 502 564 - -
Tsu03g02527 564 ProSiteProfiles B3 DNA-binding domain profile. 58 124 IPR003340 GO:0003677
Tsu03g02527 564 Gene3D - 24 126 IPR015300 -
Tsu03g02527 564 Pfam B3 DNA binding domain 46 122 IPR003340 GO:0003677
Tsu03g02527 564 Pfam B3 DNA binding domain 490 560 IPR003340 GO:0003677
Tsu03g02527 564 CDD B3_DNA 46 122 IPR003340 GO:0003677
Tsu03g02527 564 ProSiteProfiles B3 DNA-binding domain profile. 506 564 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02527 20 127 B3 DNA Binding Superfamily AT4G01580 26.126 2.23e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu03g02527 B3 4.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02527 - - cam:101495675 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02527 03 30152093 30155541 Tsu03g02527 03 30152093 30155541 ECH