Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02522 ATGGTGGTTATTCGTTCACAATCCAGCAGCAACATGGTTGATTCAGCTCAGGGTTTGTCGGATTTGTCACCGGTTGAAGATGCGATACCCAATGATGCGCCTGAGGTTCAAAGAGAAGACGAAGACGCGGAAAATAGTAGCACCGAGAGTTTAGGAGGCTGTCGTTTTGATAATGCAAAAGCCGTGAATTCATTGGAGGACATCACATGTATTAATTTCAAAGAAATGAGCATCGAGAGTATAATGAAATACCATTTCTTGGATGTTGCTGtagcttttattttttacaactGGTTTGCAAGTTTAAATGGTTTTGCCGGAAGAAACTGCAGAGTAGTAAGGAACAAAAATGGAGTATTAACTCAGCAGACATTTGTTTGCTATAGACAAGGCATTGCCAAAGAGAACAAATTTCCTTCCACAAGTCGACGTCGTGAAGCAAGAAATCGCACCAGATGTGGTTGTGAGGCTAAGTGTTGTGTTCACGTTGATAGAAGAAGTGGTAGATGGTTCTTCAAATTGTTCAATAACGTCCATAACCATTCTTTGTTGGATGATCATTTTATGTCTATGTTACCGAGTCACAGAAAGATGACCAATTATGACATTTGGCGTATGACTCACATGAGGCATGTTGGAATAAAGACTAACCATATCTATGGGTTGTTTGCTAGTGAAGCTGGGGGTTTTGAAAATGTTGGTTTTCGAAGGAAAGACATTACAATGTTTTGGAGGCATAAGATTGATGATGATGGAAGACTTACACATTTGTTTTGGTGTGATGGTGCTGCTCAAAGGGATTACAATGTTTTTGGTGATGTAGTTGCTTTTGATGCTACATACAAGAGGAACAAAACATATGTGTGGTTGTTGGAACAATTTTTGGAAGCAATGGGTGGTAAAAGTCCAACATCAGTGATAACAGATGGTGATTTGACAATGAGGAATGCAATTAAGAGGAAATTCAGACAATGCATGTTGGGTGACTTTGATGTTGATGAGTTTAAGACAAGGTGGAAAAAAATGGTGGCTGATTTTGGACTGGAAAACAATAAATGGGTTCGAGAAATGTATGACAAGCGGCATATGTGGGCAACCGCGCACATAAGAGGGAAATTTTTTGCTGGATTCCGAACCACTTCTCGGTGCGAAGGATTACACACTCAATTTGGTAGTGATATAGAGGCAGACTTTGCTTCTATTCATGGTGAACCCGTTTTACAAACCCCTTTACCTGATATTGAGAGAGTGGCTGGAATAGTGTACACGAGAGATGTGTTTCTTTTTTTCCAACCGGTGCTTCGTAGGGCATGCACATGTACTGTTGTTGACGGTAGGCAAACATCTTCTTCTTATGTTTACACTATCTACAAGTACCCTAAACAAAATGTTGCATGGAAAGTGTCTTTTTCTTCATCGACCCTCAATTTCAATTGTTCATGTAAGAGGTTTGAGTCCCTGGGCATTGCCTGCGAACATATAATAGCTGTTTTGGTGTATTTAAACATTGTCACTCTGCCGGAATGTCTTGTTTTAAAGAGATGGACCAAAAATACTAAAGATTCAGTAACTTTTACAAGTCCGAAAAATGATTTCTCAAAGGAGCCTACAAAGATAAgccaattttcaaatttggttGAGCGTTGCAAGAGGATGTCTGTAGCAGCTGTAAATTGTGACAATCCAAAACTGATGCGTAGTATGATTGGCATAATTGATACACAAACAAAGGTATTAGAAAATGCATGCACTAAAGAGGATTCGTCACACCAGGAAAGGGCCGGTGGAGGACATCGCAAACATGTGGTGTATGCCAACAAAGAAGGACACAATCGAATTTCATGTCCTGCACTGTCTCAAAATGGTGGTAATGTTGTGGGTGATGAATATGATGGTGGTTATGGTGATGTAGGCATGATTGACATGGACCTCAATTGA 1938 0.3937 MVVIRSQSSSNMVDSAQGLSDLSPVEDAIPNDAPEVQREDEDAENSSTESLGGCRFDNAKAVNSLEDITCINFKEMSIESIMKYHFLDVAVAFIFYNWFASLNGFAGRNCRVVRNKNGVLTQQTFVCYRQGIAKENKFPSTSRRREARNRTRCGCEAKCCVHVDRRSGRWFFKLFNNVHNHSLLDDHFMSMLPSHRKMTNYDIWRMTHMRHVGIKTNHIYGLFASEAGGFENVGFRRKDITMFWRHKIDDDGRLTHLFWCDGAAQRDYNVFGDVVAFDATYKRNKTYVWLLEQFLEAMGGKSPTSVITDGDLTMRNAIKRKFRQCMLGDFDVDEFKTRWKKMVADFGLENNKWVREMYDKRHMWATAHIRGKFFAGFRTTSRCEGLHTQFGSDIEADFASIHGEPVLQTPLPDIERVAGIVYTRDVFLFFQPVLRRACTCTVVDGRQTSSSYVYTIYKYPKQNVAWKVSFSSSTLNFNCSCKRFESLGIACEHIIAVLVYLNIVTLPECLVLKRWTKNTKDSVTFTSPKNDFSKEPTKISQFSNLVERCKRMSVAAVNCDNPKLMRSMIGIIDTQTKVLENACTKEDSSHQERAGGGHRKHVVYANKEGHNRISCPALSQNGGNVVGDEYDGGYGDVGMIDMDLN 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02522 645 MobiDBLite consensus disorder prediction 1 51 - -
Tsu03g02522 645 ProSiteProfiles Zinc finger SWIM-type profile. 464 502 IPR007527 GO:0008270
Tsu03g02522 645 Pfam SWIM zinc finger 478 501 IPR007527 GO:0008270
Tsu03g02522 645 SMART 26again6 477 504 IPR006564 GO:0008270
Tsu03g02522 645 Pfam FAR1 DNA-binding domain 95 184 IPR004330 -
Tsu03g02522 645 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 319 551 IPR031052 GO:0006355
Tsu03g02522 645 MobiDBLite consensus disorder prediction 1 18 - -
Tsu03g02522 645 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 66 324 - -
Tsu03g02522 645 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 319 551 - -
Tsu03g02522 645 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 324 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02522 Tsu-Chr3 30107366 30109916 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu03g02522 FAR1 1.1e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02522 - - ahf:112758016 428.713