Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02512 ATggccaacaacaacaacatcgaCCCTAATACTGGTTACTGTTCACAGTCTAAAACCTTCCATAGCCTCCGTCCAATCGTCCCTCTCCCTCCACTTTCTCAACCTCTTTCTCTAACCGACTACTCACTCTCTCTCCTCCCTGAAACCGCCATCTCAAACAACATCCCTGCTCTCATTGACTCCGCCACTAACCACCACCTCACTTACCCCACTTTCCTCCGCCAAATCAAATCCCTCACTTCCTTCCTCCAACAATCACGCACTCCTCTCATCAAAGGCCACGTGGCATTAATCCTCACCCCGTCTTCCTTACACGTCCCCGTACTTTATTTCTCTCTCCTCTCCCTCGGCGTCACCGTCGCACCTGCTAACCCACTCAGTTCCCAATCCGAGTTAACTCACTTGATTCAACTTACGAAACCTGTCATCGCATTCGCTACTTCCACAACCGCTTCCAAAATCCCCAATCTTCCATTCGGCACAATCGTAATCGATTCTCCTTCATTTCTTTCCATACTCGATTCGAACTCCAACTCAGAAACTCGCCGAGTTGAAACGAGTCAATCAGACACAGCGGCGATTCTTTTCTCTTCGGGAACAACTGGAAAAATTAAAGGCGTGTTGTTAACTCATCGTAACCTTATTGCGTTGATTGGAGGATTTTGTTACCTGAAGCACGCGTATGATGACGGCGTTATAAATGAACCGCATCCGGTGTCGCTGTTTCCGCTTCCTCTTTTTCATGTGTTTGGATTTTTTATGTTGGTGAGGGCTTTGGCTATGGGGGAGACACTGGTGTTGATGCAGAGGTTTGATTTTGAAGGGATGTTGAAGACTGTGGAGAAGTATAGGATTACTTATATGCCGGTGTCGCCACCATTGGTTACGGCGTTTGCTAAGTCGGAGTTGGTTAAGAAATATGATCTTAGTTCGCTTCGGTTGTTGGGGTCCGGTGGTGCTCCGCTTGGCAAGGAAGTTGCGGAGAGCTTCAAAACCAAATTCCCCAACGTGGAAATTGTGCAGGGCTATGGTCTAACTGAAAGTGGAGGAGGGGCATCAAGAATGATAGGGTTTGATGAGGCTAAGCACTATGGTTCTGTGGGTCGACTAGCAGAAAATATGGAGGCCAAGATAGTTGACCCTGTTACAGGAGAGGCATTATCTCCTGGTCAGAAAGGGGAGCTTTGGTTGCGAGGACCAACAATCATGAAAGGTTATATAGGAGATGACAAGGCAACCGTTGAGACATTGGATTCAAAGGGATGGCTGAAGACTGGCGATCTTTGTTATTTTGACTCTGATGGTTTTCTATTCATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAGCACATACTTCATACAAATCCTGAAATTGCTGATGCTGCAGTAATTCCGTATCCTGATGAAGATGCTGGGCAGATTCCAATGGCTTTTGTGGTAAGAAAGCCTGGAAGCAACATCACTGCCGCTCAGGTCATGGAGTATGTGGCAAAGCAGGTAGCACCATACAAGAAGATACGACGTGTTTCTTTTGTTAACTCTATTCCTAAATCTCCAGCTGGCAAAATTTTAAGAAGAGAATTAGTTGATATTGCTCTAACTAGTGGTTCATCCAAATTGTGA 1656 0.4523 MANNNNIDPNTGYCSQSKTFHSLRPIVPLPPLSQPLSLTDYSLSLLPETAISNNIPALIDSATNHHLTYPTFLRQIKSLTSFLQQSRTPLIKGHVALILTPSSLHVPVLYFSLLSLGVTVAPANPLSSQSELTHLIQLTKPVIAFATSTTASKIPNLPFGTIVIDSPSFLSILDSNSNSETRRVETSQSDTAAILFSSGTTGKIKGVLLTHRNLIALIGGFCYLKHAYDDGVINEPHPVSLFPLPLFHVFGFFMLVRALAMGETLVLMQRFDFEGMLKTVEKYRITYMPVSPPLVTAFAKSELVKKYDLSSLRLLGSGGAPLGKEVAESFKTKFPNVEIVQGYGLTESGGGASRMIGFDEAKHYGSVGRLAENMEAKIVDPVTGEALSPGQKGELWLRGPTIMKGYIGDDKATVETLDSKGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVIPYPDEDAGQIPMAFVVRKPGSNITAAQVMEYVAKQVAPYKKIRRVSFVNSIPKSPAGKILRRELVDIALTSGSSKL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02512 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 540 - -
Tsu03g02512 551 SUPERFAMILY Acetyl-CoA synthetase-like 53 544 - -
Tsu03g02512 551 Gene3D - 30 444 IPR042099 -
Tsu03g02512 551 Pfam AMP-binding enzyme 54 449 IPR000873 -
Tsu03g02512 551 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Tsu03g02512 551 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 20 540 - -
Tsu03g02512 551 CDD 4CL 30 539 - -
Tsu03g02512 551 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Tsu03g02512 551 Gene3D - 445 545 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02512 Tsu-Chr3 29815761 29820664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02512 7 551 Monolignol Biosynthesis Gene Families AT5G63380 59.353 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02512 K01904 - gmx:100804044 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02512 03 29815761 29820664 Tsu03g02512 03 29815761 29820664 ECH